CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_MYB

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_MYB
TF_MYB alone
In pair
with
1GO:0030154 cell differentiation
538
before_TSS
36
yes
 
2GO:0051276 chromosome organization and biogenesis
220
after_TSS
33
yes
TF_AHR, TF_TAXCREB1,
3GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
208
after_TSS
31
yes
TF_AHR,
4GO:0016071 mRNA metabolism
202
after_TSS
29
yes
many
5GO:0006397 mRNA processing
189
after_TSS
28
yes
TF_AP2, TF_AP2A, TF_NFKB,
6GO:0051301 cell division
134
at_TSS
26
yes
 
7GO:0016568 chromatin modification
78
after_TSS
26
yes
TF_AP2, TF_AP2A,
8GO:0000910 cytokinesis
125
at_TSS
25
yes
 
9GO:0008380 RNA splicing
154
before_TSS,after_TSS
24
yes
TF_ELK, TF_NFKB,
10GO:0000398 nuclear mRNA splicing, via spliceosome
149
before_TSS,after_TSS
23
yes
TF_ELK, TF_NFKB,
11GO:0005975 carbohydrate metabolism
308
before_TSS
23
 
MIT_017IRF,
12GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
149
before_TSS,after_TSS
23
yes
TF_ELK, TF_NFKB,
13GO:0000375 RNA splicing, via transesterification reactions
149
before_TSS,after_TSS
23
yes
TF_ELK, TF_NFKB,
14GO:0006323 DNA packaging
188
after_TSS
22
 
TF_AHR, TF_AP2A, TF_PAX4,
15GO:0004386 helicase activity
108
at_TSS
22
yes
 
16GO:0006333 chromatin assembly or disassembly
121
after_TSS
21
yes
TF_AHR,
17GO:0006325 establishment and/or maintenance of chromatin architecture
179
after_TSS
21
 
TF_AHR,
18GO:0009308 amine metabolism
252
before_TSS
21
 
MIT_073LEF,
19GO:0006461 protein complex assembly
123
after_TSS
19
yes
TF_AHR,
20GO:0006396 RNA processing
273
after_TSS
17
 
TF_NFKB,
21GO:0031497 chromatin assembly
95
after_TSS
16
yes
TF_AHR,
22GO:0006334 nucleosome assembly
86
after_TSS
15
yes
TF_AHR,
23GO:0016758 transferase activity, transferring hexosyl groups
109
before_TSS
12
 
MIT_017IRF,
24GO:0006457 protein folding
163
at_TSS
11
 
TF_HTF,
25GO:0006732 coenzyme metabolism
159
after_TSS
10
 
TF_HNF4, ADD_LRH,
26GO:0007276 gametogenesis
119
before_TSS
10
 
TF_MYC,
27GO:0051186 cofactor metabolism
181
after_TSS
10
 
TF_HNF4,
28GO:0008194 UDP-glycosyltransferase activity
69
before_TSS
10
 
MIT_017IRF,

Pairs of TF_MYB binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1TF_AHR
after_TSS
8
GO:0051276 chromosome organization and biogenesis
24
220
2TF_NFKB
after_TSS
7
GO:0006396 RNA processing
17
273
3TF_AP2A
after_TSS
4
GO:0006397 mRNA processing
23
189
4TF_ELK
before_TSS
4
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
17
149
5MIT_017IRF
before_TSS
3
GO:0005975 carbohydrate metabolism
23
308
6TF_AP2
after_TSS
3
GO:0006397 mRNA processing
22
189
7TF_HNF4
after_TSS
2
GO:0051186 cofactor metabolism
10
181
8TF_PAX4
after_TSS
1
GO:0006323 DNA packaging
10
188
9ADD_LRH
after_TSS
1
GO:0006732 coenzyme metabolism
10
159
10MIT_073LEF
before_TSS
1
GO:0009308 amine metabolism
21
252
11TF_MYC
before_TSS
1
GO:0007276 gametogenesis
10
119
12TF_HTF
at_TSS
1
GO:0006457 protein folding
11
163
13TF_TAXCREB1
after_TSS
1
GO:0051276 chromosome organization and biogenesis
11
220
14TF_SP1
after_TSS
1
GO:0016071 mRNA metabolism
21
202

Details on Gene Ontology terms for targets of TF_MYB

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
yes
before_TSS
36
538
6.6
4.3
1.54
2.753
0.0059
0.04
GO:0030154 cell differentiation
2none
 
yes
after_TSS
33
220
15
6.5
2.28
5.086
0
0
GO:0051276 chromosome organization and biogenesis
3none
 
yes
after_TSS
33
302
10.9
6.5
1.66
3.088
0.002
0.0144
GO:0005667
4none
 
yes
after_TSS
31
208
14.9
6.5
2.26
4.886
0
0.0001
GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
5none
 
yes
after_TSS
29
202
14.3
6.5
2.18
4.498
0
0.0025
GO:0016071 mRNA metabolism
6none
 
yes
after_TSS
28
189
14.8
6.5
2.25
4.604
0
0.0015
GO:0006397 mRNA processing
7none
 
 
after_TSS
26
78
33.3
19.4
1.71
3.117
0.0018
0.0607
GO:0016568 chromatin modification
8none
 
 
at_TSS
26
134
19.4
11.4
1.7
2.926
0.0034
0.0785
GO:0051301 cell division
9none
 
 
at_TSS
25
125
20
11.4
1.75
3.036
0.0023
0.0584
GO:0000910 cytokinesis
10none
 
yes
after_TSS
24
154
15.5
6.5
2.36
4.538
0
0.002
GO:0008380 RNA splicing
11none
 
yes
after_TSS
23
149
15.4
6.5
2.34
4.389
0
0.0041
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
12none
 
yes
after_TSS
23
149
15.4
6.5
2.34
4.389
0
0.0041
GO:0000375 RNA splicing, via transesterification reactions
13none
 
yes
after_TSS
23
149
15.4
6.5
2.34
4.389
0
0.0041
GO:0000398 nuclear mRNA splicing, via spliceosome
14none
 
 
at_TSS
22
108
20.3
11.4
1.78
2.941
0.0032
0.0855
GO:0004386 helicase activity
15none
 
yes
after_TSS
21
121
17.3
6.5
2.63
4.807
0
0.0001
GO:0006333 chromatin assembly or disassembly
16none
 
yes
after_TSS
19
123
15.4
6.5
2.34
3.988
0
0.004
GO:0006461 protein complex assembly
17none
 
yes
after_TSS
16
95
16.8
6.5
2.56
4.052
0
0.0016
GO:0031497 chromatin assembly
18none
 
yes
after_TSS
15
86
17.4
6.5
2.65
4.079
0
0.0015
GO:0006334 nucleosome assembly
19none
 
yes
after_TSS
14
78
17.9
6.5
2.72
4.064
0
0.0013
GO:0000786
20none
 
yes
after_TSS
13
88
14.7
6.5
2.24
3.112
0.0018
0.0523
GO:0005694
21ADD_LRH
 
 
after_TSS
10
159
6.2
1.7
3.5
4.3
0
0.0671
GO:0006732 coenzyme metabolism
22MIT_017IRF
 
 
before_TSS
23
308
7.4
3
2.46
4.598
0
0.0921
GO:0005975 carbohydrate metabolism
23MIT_017IRF
 
 
before_TSS
12
109
11
3
3.63
4.878
0
0.0463
GO:0016758 transferase activity, transferring hexosyl groups
24MIT_017IRF
 
 
before_TSS
10
69
14.4
3
4.77
5.567
0
0.0011
GO:0008194 UDP-glycosyltransferase activity
25MIT_073LEF
 
 
before_TSS
21
252
8.3
3.2
2.56
4.603
0
0.0359
GO:0009308 amine metabolism
26TF_AHR
 
 
after_TSS
24
220
10.9
4
2.72
5.267
0
0.0001
GO:0051276 chromosome organization and biogenesis
27TF_AHR
 
 
after_TSS
24
208
11.5
4
2.87
5.585
0
0
GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
28TF_AHR
 
 
after_TSS
22
188
11.7
4
2.92
5.421
0
0
GO:0006323 DNA packaging
29TF_AHR
 
 
after_TSS
21
179
11.7
4
2.92
5.308
0
0.0001
GO:0006325 establishment and/or maintenance of chromatin architecture
30TF_AHR
 
 
after_TSS
15
121
12.3
4
3.09
4.728
0
0.0013
GO:0006333 chromatin assembly or disassembly
31TF_AHR
 
 
after_TSS
15
123
12.1
4
3.04
4.653
0
0.0019
GO:0006461 protein complex assembly
32TF_AHR
 
 
after_TSS
11
86
12.7
4
3.19
4.167
0
0.0173
GO:0006334 nucleosome assembly
33TF_AHR
 
 
after_TSS
11
95
11.5
4
2.88
3.777
0.0001
0.089
GO:0031497 chromatin assembly
34TF_AHR
 
 
after_TSS
10
78
12.8
4
3.19
3.981
0
0.0429
GO:0000786
35TF_AP2
 
 
after_TSS
22
189
11.6
4.6
2.48
4.551
0
0.0135
GO:0006397 mRNA processing
36TF_AP2
 
 
after_TSS
22
202
10.8
4.6
2.32
4.2
0
0.0501
GO:0016071 mRNA metabolism
37TF_AP2
 
 
after_TSS
12
78
15.3
4.6
3.27
4.479
0
0.0405
GO:0016568 chromatin modification
38TF_AP2A
 
 
after_TSS
23
202
11.3
4.7
2.41
4.507
0
0.0135
GO:0016071 mRNA metabolism
39TF_AP2A
 
 
after_TSS
23
189
12.1
4.7
2.57
4.869
0
0.0032
GO:0006397 mRNA processing
40TF_AP2A
 
 
after_TSS
20
188
10.6
4.7
2.25
3.858
0.0001
0.0676
GO:0006323 DNA packaging
41TF_AP2A
 
 
after_TSS
13
78
16.6
4.7
3.53
4.993
0
0.0064
GO:0016568 chromatin modification
42TF_ELK
 
 
before_TSS
17
154
11
3.8
2.87
4.676
0
0.0158
GO:0008380 RNA splicing
43TF_ELK
 
 
before_TSS
17
149
11.4
3.8
2.96
4.835
0
0.0082
GO:0000375 RNA splicing, via transesterification reactions
44TF_ELK
 
 
before_TSS
17
149
11.4
3.8
2.96
4.835
0
0.0082
GO:0000398 nuclear mRNA splicing, via spliceosome
45TF_ELK
 
 
before_TSS
17
149
11.4
3.8
2.96
4.835
0
0.0082
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
46TF_HNF4
 
 
after_TSS
10
159
6.2
1.5
4.18
4.99
0
0.0052
GO:0006732 coenzyme metabolism
47TF_HNF4
 
 
after_TSS
10
181
5.5
1.5
3.67
4.478
0
0.0325
GO:0051186 cofactor metabolism
48TF_HTF
 
 
at_TSS
11
163
6.7
2
3.26
4.231
0
0.0502
GO:0006457 protein folding
49TF_MYC
 
 
before_TSS
10
119
8.4
2.1
3.83
4.654
0
0.0468
GO:0007276 gametogenesis
50TF_NFKB
 
 
after_TSS
17
273
6.2
1.8
3.45
5.561
0
0.0001
GO:0006396 RNA processing
51TF_NFKB
 
 
after_TSS
14
202
6.9
1.8
3.84
5.527
0
0.0001
GO:0016071 mRNA metabolism
52TF_NFKB
 
 
after_TSS
14
189
7.4
1.8
4.11
5.84
0
0
GO:0006397 mRNA processing
53TF_NFKB
 
 
after_TSS
11
154
7.1
1.8
3.96
5.016
0
0.0019
GO:0008380 RNA splicing
54TF_NFKB
 
 
after_TSS
10
149
6.7
1.8
3.72
4.534
0
0.0147
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
55TF_NFKB
 
 
after_TSS
10
149
6.7
1.8
3.72
4.534
0
0.0147
GO:0000375 RNA splicing, via transesterification reactions
56TF_NFKB
 
 
after_TSS
10
149
6.7
1.8
3.72
4.534
0
0.0147
GO:0000398 nuclear mRNA splicing, via spliceosome
57TF_PAX4
 
 
after_TSS
10
188
5.3
1.4
3.76
4.573
0
0.0035
GO:0006323 DNA packaging
58TF_SP1
 
 
after_TSS
21
202
10.3
4.4
2.35
4.166
0
0.0558
GO:0016071 mRNA metabolism
59TF_TAXCREB1
 
 
after_TSS
11
220
5
1.4
3.51
4.525
0
0.0045
GO:0051276 chromosome organization and biogenesis