CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_OCT

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_OCT
TF_OCT alone
In pair
with
1GO:0030528 transcription regulator activity
941
before_TSS
72
yes
 
2GO:0006952 defense response
463
at_TSS,after_TSS
63
yes
 
3GO:0003700 transcription factor activity
719
at_TSS,after_TSS
41
yes
 
4GO:0009607 response to biotic stimulus
483
at_TSS
38
yes
 
5GO:0043207 response to external biotic stimulus
237
after_TSS
33
yes
MIT_013LEF,
6GO:0006955 immune response
379
at_TSS
32
yes
 
7GO:0009605 response to external stimulus
489
before_TSS
31
 
TF_HLF,
8GO:0051276 chromosome organization and biogenesis
220
at_TSS
25
yes
MIT_005NFY, TF_NFY,
9GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
208
at_TSS
24
yes
MIT_005NFY, TF_NFY,
10GO:0006323 DNA packaging
188
at_TSS
23
yes
TF_CEBP, MIT_005NFY, TF_NFY,
11GO:0006325 establishment and/or maintenance of chromatin architecture
179
at_TSS
21
yes
MIT_005NFY, TF_NFY,
12GO:0003723 RNA binding
354
before_TSS
21
 
TF_TGIF,
13GO:0006333 chromatin assembly or disassembly
121
at_TSS
19
yes
MIT_005NFY, TF_NFY,
14GO:0007600 sensory perception
196
at_TSS
18
yes
 
15GO:0031497 chromatin assembly
95
at_TSS
18
yes
TF_NFY,
16GO:0006461 protein complex assembly
123
at_TSS,before_TSS
18
yes
TF_FOXJ2, TF_NFY,
17GO:0006334 nucleosome assembly
86
at_TSS
18
yes
TF_NFY,
18GO:0007389 pattern specification
128
before_TSS
18
yes
 
19GO:0004497 monooxygenase activity
90
after_TSS
17
yes
 
20GO:0004263 chymotrypsin activity
90
after_TSS
16
yes
 
21GO:0005529 sugar binding
144
before_TSS
16
 
MIT_029, TF_POLYA, TF_BRN,
22GO:0045941 positive regulation of transcription
103
before_TSS
13
yes
 
23GO:0045935 positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
104
before_TSS
13
yes
 
24GO:0009889 regulation of biosynthesis
73
before_TSS
13
yes
 
25GO:0001614 purinergic nucleotide receptor activity
53
after_TSS
12
yes
 
26GO:0001608 nucleotide receptor activity, G-protein coupled
53
after_TSS
12
yes
 
27GO:0045028 purinergic nucleotide receptor activity, G-protein coupled
53
after_TSS
12
yes
 
28GO:0016502 nucleotide receptor activity
53
after_TSS
12
yes
 
29GO:0006417 regulation of protein biosynthesis
68
before_TSS
12
yes
 
30GO:0045321 immune cell activation
102
before_TSS
10
 
TF_EVI,
31GO:0005179 hormone activity
97
before_TSS
10
 
TF_GFI,
32GO:0001775 cell activation
103
before_TSS
10
 
TF_EVI,

Pairs of TF_OCT binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1TF_NFY
at_TSS
8
GO:0051276 chromosome organization and biogenesis
17
220
2MIT_005NFY
at_TSS
5
GO:0051276 chromosome organization and biogenesis
11
220
3TF_EVI
before_TSS
2
GO:0001775 cell activation
10
103
4MIT_029
before_TSS
1
GO:0005529 sugar binding
15
144
5TF_CEBP
at_TSS
1
GO:0006323 DNA packaging
10
188
6TF_FOXJ2
before_TSS
1
GO:0006461 protein complex assembly
12
123
7TF_BRN
before_TSS
1
GO:0005529 sugar binding
16
144
8TF_POLYA
before_TSS
1
GO:0005529 sugar binding
15
144
9TF_TGIF
before_TSS
1
GO:0003723 RNA binding
21
354
10TF_HLF
before_TSS
1
GO:0009605 response to external stimulus
31
489
11MIT_013LEF
after_TSS
1
GO:0043207 response to external biotic stimulus
12
237
12TF_GFI
before_TSS
1
GO:0005179 hormone activity
10
97

Details on Gene Ontology terms for targets of TF_OCT

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
yes
before_TSS
72
941
7.6
4.8
1.56
4.118
0
0.0002
GO:0030528 transcription regulator activity
2none
 
 
after_TSS
63
463
13.6
8.8
1.53
3.651
0.0002
0.0025
GO:0006952 defense response
3none
 
yes
at_TSS
41
719
5.7
2.2
2.49
6.311
0
0
GO:0003700 transcription factor activity
4none
 
 
at_TSS
38
463
8.2
4.9
1.66
3.317
0.0009
0.0075
GO:0006952 defense response
5none
 
 
at_TSS
38
483
7.8
4.9
1.59
3.039
0.0023
0.0173
GO:0009607 response to biotic stimulus
6none
 
yes
after_TSS
36
719
5
2.3
2.13
4.858
0
0
GO:0003700 transcription factor activity
7none
 
 
after_TSS
33
237
13.9
8.8
1.56
2.761
0.0057
0.0421
GO:0043207 response to external biotic stimulus
8none
 
 
at_TSS
32
379
8.4
4.9
1.71
3.206
0.0013
0.0133
GO:0006955 immune response
9none
 
 
after_TSS
29
181
16
8.8
1.8
3.407
0.0006
0.06
GO:0005578
10none
 
 
at_TSS
29
356
8.1
4.9
1.65
2.841
0.0044
0.0411
GO:0005576
11none
 
 
at_TSS
25
220
11.3
4.9
2.3
4.445
0
0.0003
GO:0051276 chromosome organization and biogenesis
12none
 
yes
before_TSS
25
302
8.2
4.8
1.69
2.781
0.0054
0.0204
GO:0005667
13none
 
 
at_TSS
24
208
11.5
4.9
2.33
4.437
0
0.0003
GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
14none
 
 
at_TSS
23
188
12.2
4.9
2.48
4.659
0
0.0001
GO:0006323 DNA packaging
15none
 
 
at_TSS
21
179
11.7
4.9
2.37
4.231
0
0.0007
GO:0006325 establishment and/or maintenance of chromatin architecture
16none
 
 
at_TSS
19
121
15.7
4.9
3.18
5.498
0
0
GO:0006333 chromatin assembly or disassembly
17none
 
yes
after_TSS
19
302
6.2
2.3
2.68
4.586
0
0
GO:0005667
18none
 
 
at_TSS
18
86
20.9
4.9
4.24
6.875
0
0
GO:0006334 nucleosome assembly
19none
 
yes
before_TSS
18
128
14
4.8
2.88
4.852
0
0
GO:0007389 pattern specification
20none
 
 
at_TSS
18
95
18.9
4.9
3.84
6.332
0
0
GO:0031497 chromatin assembly
21none
 
 
at_TSS
18
123
14.6
4.9
2.96
4.993
0
0
GO:0006461 protein complex assembly
22none
 
 
at_TSS
18
196
9.1
4.9
1.86
2.77
0.0056
0.0932
GO:0007600 sensory perception
23none
 
 
after_TSS
17
90
18.8
8.8
2.12
3.353
0.0007
0.0195
GO:0004497 monooxygenase activity
24none
 
 
at_TSS
17
78
21.7
4.9
4.41
6.899
0
0
GO:0000786
25none
 
 
after_TSS
16
90
17.7
8.8
2
2.981
0.0028
0.0618
GO:0004263 chymotrypsin activity
26none
yes
 
before_TSS
13
73
17.8
6.5
2.71
3.887
0.0001
0.0371
GO:0009889 regulation of biosynthesis
27none
 
 
at_TSS
13
88
14.7
4.9
2.99
4.278
0
0.0006
GO:0005694
28none
 
yes
before_TSS
13
104
12.5
4.8
2.56
3.626
0.0002
0.015
GO:0045935 positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
29none
 
yes
before_TSS
13
103
12.6
4.8
2.58
3.666
0.0002
0.0128
GO:0045941 positive regulation of transcription
30none
yes
 
before_TSS
12
68
17.6
6.5
2.68
3.697
0.0002
0.0798
GO:0006417 regulation of protein biosynthesis
31none
 
 
after_TSS
12
53
22.6
8.8
2.55
3.532
0.0004
0.0251
GO:0045028 purinergic nucleotide receptor activity, G-protein coupled
32none
 
 
after_TSS
12
53
22.6
8.8
2.55
3.532
0.0004
0.0251
GO:0001614 purinergic nucleotide receptor activity
33none
 
 
after_TSS
12
53
22.6
8.8
2.55
3.532
0.0004
0.0251
GO:0016502 nucleotide receptor activity
34none
 
 
after_TSS
12
53
22.6
8.8
2.55
3.532
0.0004
0.0251
GO:0001608 nucleotide receptor activity, G-protein coupled
35MIT_005NFY
 
 
at_TSS
11
208
5.2
0.4
11.63
10.455
0
0
GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
36MIT_005NFY
 
 
at_TSS
11
220
5
0.4
11
10.116
0
0
GO:0051276 chromosome organization and biogenesis
37MIT_005NFY
 
 
at_TSS
11
188
5.8
0.4
12.87
11.087
0
0
GO:0006323 DNA packaging
38MIT_005NFY
 
 
at_TSS
10
179
5.5
0.4
12.29
10.284
0
0
GO:0006325 establishment and/or maintenance of chromatin architecture
39MIT_005NFY
 
 
at_TSS
10
121
8.2
0.4
18.18
12.836
0
0
GO:0006333 chromatin assembly or disassembly
40MIT_013LEF
 
 
after_TSS
12
237
5
1.2
4.16
5.462
0
0.0005
GO:0043207 response to external biotic stimulus
41MIT_029
 
 
before_TSS
15
144
10.4
3.3
3.07
4.69
0
0.0073
GO:0005529 sugar binding
42TF_BRN
 
 
before_TSS
16
144
11.1
3.5
3.1
4.896
0
0.0046
GO:0005529 sugar binding
43TF_CEBP
 
 
at_TSS
10
188
5.3
0.5
10.38
9.304
0
0
GO:0006323 DNA packaging
44TF_EVI
 
 
before_TSS
10
102
9.8
2.4
3.99
4.818
0
0.0626
GO:0045321 immune cell activation
45TF_EVI
 
 
before_TSS
10
103
9.7
2.4
3.95
4.779
0
0.0761
GO:0001775 cell activation
46TF_FOXJ2
 
 
before_TSS
12
123
9.7
3.4
2.86
3.904
0
0.0361
GO:0006461 protein complex assembly
47TF_GFI
 
 
before_TSS
10
97
10.3
2.8
3.64
4.465
0
0.0432
GO:0005179 hormone activity
48TF_HLF
 
 
before_TSS
31
489
6.3
3
2.09
4.37
0
0.0894
GO:0009605 response to external stimulus
49TF_NFY
 
 
at_TSS
17
220
7.7
1
7.6
10.015
0
0
GO:0051276 chromosome organization and biogenesis
50TF_NFY
 
 
at_TSS
16
208
7.6
1
7.56
9.682
0
0
GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
51TF_NFY
 
 
at_TSS
16
188
8.5
1
8.37
10.325
0
0
GO:0006323 DNA packaging
52TF_NFY
 
 
at_TSS
15
123
12.1
1
11.99
12.424
0
0
GO:0006461 protein complex assembly
53TF_NFY
 
 
at_TSS
15
78
19.2
1
18.92
16.09
0
0
GO:0000786
54TF_NFY
 
 
at_TSS
15
121
12.3
1
12.19
12.543
0
0
GO:0006333 chromatin assembly or disassembly
55TF_NFY
 
 
at_TSS
15
95
15.7
1
15.53
14.412
0
0
GO:0031497 chromatin assembly
56TF_NFY
 
 
at_TSS
15
86
17.4
1
17.16
15.24
0
0
GO:0006334 nucleosome assembly
57TF_NFY
 
 
at_TSS
15
179
8.3
1
8.24
9.895
0
0
GO:0006325 establishment and/or maintenance of chromatin architecture
58TF_NFY
 
 
at_TSS
10
88
11.3
1
11.18
9.712
0
0
GO:0005694
59TF_POLYA
 
 
before_TSS
15
144
10.4
3.8
2.7
4.119
0
0.0498
GO:0005529 sugar binding
60TF_TGIF
 
 
before_TSS
21
354
5.9
2.3
2.53
4.541
0
0.0268
GO:0003723 RNA binding