CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_POU3F

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_POU3F
TF_POU3F alone
In pair
with
1GO:0003677 DNA binding
1509
at_TSS
112
yes
 
2GO:0030528 transcription regulator activity
941
before_TSS
74
yes
 
3GO:0008233 peptidase activity
559
after_TSS
67
yes
 
4GO:0048513 organ development
852
before_TSS
63
yes
 
5GO:0009653 morphogenesis
811
before_TSS
63
yes
 
6GO:0009607 response to biotic stimulus
483
at_TSS,after_TSS
62
yes
 
7GO:0009605 response to external stimulus
489
at_TSS,after_TSS
62
yes
 
8GO:0006952 defense response
463
at_TSS,after_TSS
60
yes
 
9GO:0003700 transcription factor activity
719
at_TSS,before_TSS
56
yes
 
10GO:0009887 organ morphogenesis
674
before_TSS
55
yes
 
11GO:0006955 immune response
379
at_TSS,after_TSS
50
yes
 
12GO:0004930 G-protein coupled receptor activity
357
after_TSS
43
yes
 
13GO:0030154 cell differentiation
538
before_TSS
42
yes
 
14GO:0001584 rhodopsin-like receptor activity
283
after_TSS
35
yes
 
15GO:0006259 DNA metabolism
427
at_TSS
35
yes
 
16GO:0043207 response to external biotic stimulus
237
before_TSS,after_TSS
34
yes
TF_ARP1,
17GO:0009613 response to pest, pathogen or parasite
221
before_TSS,after_TSS
31
yes
TF_ARP1,
18GO:0004175 endopeptidase activity
397
before_TSS
31
 
TF_SOX9,
19GO:0008237 metallopeptidase activity
177
after_TSS
29
yes
 
20GO:0030246 carbohydrate binding
208
at_TSS,before_TSS,after_TSS
29
yes
TF_CDP, TF_BRN, TF_POU6F,
21GO:0051276 chromosome organization and biogenesis
220
at_TSS
25
yes
MIT_005NFY, TF_NFY,
22GO:0007600 sensory perception
196
at_TSS,after_TSS
25
yes
 
23GO:0007399 nervous system development
301
before_TSS
25
yes
 
24GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
208
at_TSS
25
yes
MIT_005NFY, TF_NFY,
25GO:0006323 DNA packaging
188
at_TSS
24
yes
TF_CEBP, MIT_005NFY, TF_NFY,
26GO:0006325 establishment and/or maintenance of chromatin architecture
179
at_TSS
23
yes
TF_CEBP, MIT_005NFY, TF_NFY,
27GO:0007389 pattern specification
128
before_TSS
22
yes
 
28GO:0004857 enzyme inhibitor activity
155
after_TSS
22
yes
 
29GO:0005529 sugar binding
144
before_TSS,after_TSS
21
yes
many
30GO:0006333 chromatin assembly or disassembly
121
at_TSS
20
yes
TF_CEBP, MIT_005NFY, TF_NFY,
31GO:0006512 ubiquitin cycle
390
before_TSS
20
 
TF_ZID,
32GO:0006461 protein complex assembly
123
at_TSS
20
yes
TF_CEBP, MIT_005NFY, TF_NFY,
33GO:0031497 chromatin assembly
95
at_TSS
19
yes
TF_CEBP, MIT_005NFY, TF_NFY,
34GO:0006334 nucleosome assembly
86
at_TSS
19
yes
TF_CEBP, MIT_005NFY, TF_NFY,
35GO:0004222 metalloendopeptidase activity
99
after_TSS
18
yes
 
36GO:0005179 hormone activity
97
before_TSS,after_TSS
16
yes
TF_HAND, TF_LHX,
37GO:0050381 unspecific monooxygenase activity
22
before_TSS
15
yes
 
38GO:0030182 neuron differentiation
137
before_TSS
13
yes
 
39GO:0008234 cysteine-type peptidase activity
136
before_TSS
12
 
TF_LYF,
40GO:0000904 cellular morphogenesis during differentiation
107
before_TSS
12
yes
 
41GO:0007409 axonogenesis
81
before_TSS
11
yes
 
42GO:0031175 neurite morphogenesis
96
before_TSS
11
yes
 
43GO:0048667 neuron morphogensis during differentiation
96
before_TSS
11
yes
 
44GO:0030247 polysaccharide binding
68
at_TSS
11
yes
 
45GO:0001871 pattern binding
70
at_TSS
11
yes
 
46GO:0004197 cysteine-type endopeptidase activity
118
before_TSS
11
 
TF_LYF,
47GO:0006954 inflammatory response
101
before_TSS
10
 
TF_ARP1,
48GO:0005539 glycosaminoglycan binding
60
at_TSS
10
yes
 
49GO:0004497 monooxygenase activity
90
before_TSS
10
 
TF_GATA,

Pairs of TF_POU3F binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1TF_NFY
at_TSS
8
GO:0051276 chromosome organization and biogenesis
19
220
2MIT_005NFY
at_TSS
8
GO:0051276 chromosome organization and biogenesis
12
220
3TF_CEBP
at_TSS
6
GO:0006334 nucleosome assembly
10
86
4TF_ARP1
before_TSS
3
GO:0043207 response to external biotic stimulus
20
237
5TF_POU6F
before_TSS
2
GO:0030246 carbohydrate binding
20
208
6TF_LYF
before_TSS
2
GO:0008234 cysteine-type peptidase activity
12
136
7TF_CDP
before_TSS
2
GO:0030246 carbohydrate binding
19
208
8TF_BRN
before_TSS
2
GO:0030246 carbohydrate binding
20
208
9MIT_029
before_TSS
1
GO:0005529 sugar binding
15
144
10TF_LHX
before_TSS
1
GO:0005179 hormone activity
13
97
11TF_SOX9
before_TSS
1
GO:0004175 endopeptidase activity
31
397
12TF_HAND
before_TSS
1
GO:0005179 hormone activity
11
97
13TF_ZID
before_TSS
1
GO:0006512 ubiquitin cycle
20
390
14TF_CLOX
before_TSS
1
GO:0005529 sugar binding
16
144
15TF_POLYA
before_TSS
1
GO:0005529 sugar binding
16
144
16TF_GATA
before_TSS
1
GO:0004497 monooxygenase activity
10
90

Details on Gene Ontology terms for targets of TF_POU3F

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
 
at_TSS
112
1509
7.4
4.7
1.56
5.234
0
0
GO:0003677 DNA binding
2none
 
yes
before_TSS
74
941
7.8
4.8
1.62
4.481
0
0
GO:0030528 transcription regulator activity
3none
 
 
after_TSS
67
559
11.9
7.7
1.55
3.881
0.0001
0.019
GO:0008233 peptidase activity
4none
 
yes
before_TSS
63
852
7.3
4.8
1.52
3.585
0.0003
0.0017
GO:0048513 organ development
5none
 
yes
before_TSS
63
811
7.7
4.8
1.6
4.004
0
0.0004
GO:0009653 morphogenesis
6none
 
 
after_TSS
62
489
12.6
7.7
1.64
4.206
0
0.0005
GO:0009605 response to external stimulus
7none
 
 
after_TSS
62
483
12.8
7.7
1.66
4.311
0
0.0004
GO:0009607 response to biotic stimulus
8none
 
 
after_TSS
60
463
12.9
7.7
1.68
4.318
0
0.0004
GO:0006952 defense response
9none
 
yes
before_TSS
56
719
7.7
4.8
1.6
3.781
0.0001
0.0007
GO:0003700 transcription factor activity
10none
 
yes
before_TSS
55
674
8.1
4.8
1.68
4.116
0
0.0002
GO:0009887 organ morphogenesis
11none
 
 
after_TSS
50
379
13.1
7.7
1.71
4.066
0
0.0025
GO:0006955 immune response
12none
 
 
after_TSS
43
357
12
7.7
1.56
3.117
0.0018
0.0257
GO:0004930 G-protein coupled receptor activity
13none
 
 
after_TSS
42
356
11.7
7.7
1.53
2.935
0.0033
0.0265
GO:0005576
14none
 
yes
before_TSS
42
538
7.8
4.8
1.6
3.265
0.001
0.0129
GO:0030154 cell differentiation
15none
 
yes
at_TSS
40
719
5.5
2
2.67
6.74
0
0
GO:0003700 transcription factor activity
16none
 
 
at_TSS
38
483
7.8
4.7
1.65
3.297
0.0009
0.0085
GO:0009607 response to biotic stimulus
17none
 
 
at_TSS
37
463
7.9
4.7
1.68
3.353
0.0007
0.0071
GO:0006952 defense response
18none
 
 
at_TSS
36
489
7.3
4.7
1.55
2.781
0.0054
0.0413
GO:0009605 response to external stimulus
19none
 
 
at_TSS
35
427
8.1
4.7
1.72
3.418
0.0006
0.01
GO:0006259 DNA metabolism
20none
 
 
after_TSS
35
283
12.3
7.7
1.6
2.973
0.0029
0.0337
GO:0001584 rhodopsin-like receptor activity
21none
 
 
at_TSS
35
356
9.8
4.7
2.07
4.585
0
0.0002
GO:0005576
22none
 
 
after_TSS
34
237
14.3
7.7
1.86
3.868
0.0001
0.0028
GO:0043207 response to external biotic stimulus
23none
 
 
after_TSS
31
221
14
7.7
1.81
3.553
0.0003
0.0069
GO:0009613 response to pest, pathogen or parasite
24none
 
 
at_TSS
31
379
8.1
4.7
1.72
3.198
0.0013
0.0133
GO:0006955 immune response
25none
 
yes
before_TSS
31
302
10.2
4.8
2.11
4.435
0
0
GO:0005667
26none
 
 
after_TSS
29
208
13.9
7.7
1.8
3.399
0.0006
0.019
GO:0030246 carbohydrate binding
27none
 
 
after_TSS
29
177
16.3
7.7
2.12
4.358
0
0.0048
GO:0008237 metallopeptidase activity
28none
 
 
at_TSS
25
220
11.3
4.7
2.39
4.662
0
0.0001
GO:0051276 chromosome organization and biogenesis
29none
 
 
at_TSS
25
208
12
4.7
2.53
4.98
0
0
GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
30none
 
 
after_TSS
25
196
12.7
7.7
1.65
2.67
0.0075
0.0867
GO:0007600 sensory perception
31none
 
yes
before_TSS
25
301
8.3
4.8
1.71
2.826
0.0047
0.0261
GO:0007399 nervous system development
32none
 
 
at_TSS
24
188
12.7
4.7
2.69
5.216
0
0
GO:0006323 DNA packaging
33none
 
 
at_TSS
23
179
12.8
4.7
2.7
5.14
0
0
GO:0006325 establishment and/or maintenance of chromatin architecture
34none
 
 
after_TSS
22
155
14.1
7.7
1.84
3.046
0.0023
0.053
GO:0004857 enzyme inhibitor activity
35none
 
yes
before_TSS
22
128
17.1
4.8
3.54
6.531
0
0
GO:0007389 pattern specification
36none
 
 
after_TSS
21
144
14.5
7.7
1.89
3.111
0.0018
0.0284
GO:0005529 sugar binding
37none
 
 
at_TSS
20
123
16.2
4.7
3.42
6.04
0
0
GO:0006461 protein complex assembly
38none
 
 
at_TSS
20
121
16.5
4.7
3.48
6.13
0
0
GO:0006333 chromatin assembly or disassembly
39none
 
 
at_TSS
19
86
22
4.7
4.65
7.596
0
0
GO:0006334 nucleosome assembly
40none
 
 
at_TSS
19
78
24.3
4.7
5.13
8.176
0
0
GO:0000786
41none
 
 
at_TSS
19
95
20
4.7
4.21
7.023
0
0
GO:0031497 chromatin assembly
42none
 
 
at_TSS
18
208
8.6
4.7
1.82
2.676
0.0074
0.0908
GO:0030246 carbohydrate binding
43none
 
 
after_TSS
18
99
18.1
7.7
2.35
3.922
0
0.0107
GO:0004222 metalloendopeptidase activity
44none
 
 
at_TSS
18
196
9.1
4.7
1.93
2.949
0.0031
0.0614
GO:0007600 sensory perception
45none
 
 
after_TSS
16
97
16.4
7.7
2.13
3.257
0.0011
0.0147
GO:0005179 hormone activity
46none
 
yes
at_TSS
16
302
5.2
2
2.54
3.963
0
0.001
GO:0005667
47none
 
 
before_TSS
15
22
68.1
29.9
2.27
3.92
0
0.0324
GO:0050381 unspecific monooxygenase activity
48none
 
 
at_TSS
14
88
15.9
4.7
3.35
4.946
0
0
GO:0005694
49none
 
yes
before_TSS
13
137
9.4
4.8
1.95
2.541
0.011
0.0899
GO:0030182 neuron differentiation
50none
 
yes
before_TSS
12
107
11.2
4.8
2.31
3.078
0.002
0.0476
GO:0000904 cellular morphogenesis during differentiation
51none
 
yes
before_TSS
11
81
13.5
4.8
2.8
3.669
0.0002
0.0111
GO:0007409 axonogenesis
52none
 
yes
before_TSS
11
96
11.4
4.8
2.36
3.025
0.0024
0.0649
GO:0031175 neurite morphogenesis
53none
 
 
at_TSS
11
70
15.7
4.7
3.31
4.331
0
0.0054
GO:0001871 pattern binding
54none
 
 
at_TSS
11
68
16.1
4.7
3.41
4.448
0
0.0031
GO:0030247 polysaccharide binding
55none
 
yes
before_TSS
11
96
11.4
4.8
2.36
3.025
0.0024
0.0649
GO:0048667 neuron morphogensis during differentiation
56none
 
 
at_TSS
10
60
16.6
4.7
3.51
4.356
0
0.0048
GO:0005539 glycosaminoglycan binding
57MIT_005NFY
 
 
at_TSS
12
208
5.7
0.4
12.46
11.374
0
0
GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
58MIT_005NFY
 
 
at_TSS
12
220
5.4
0.4
11.78
11.01
0
0
GO:0051276 chromosome organization and biogenesis
59MIT_005NFY
 
 
at_TSS
11
188
5.8
0.4
12.64
10.971
0
0
GO:0006323 DNA packaging
60MIT_005NFY
 
 
at_TSS
11
121
9
0.4
19.64
14.055
0
0
GO:0006333 chromatin assembly or disassembly
61MIT_005NFY
 
 
at_TSS
11
179
6.1
0.4
13.28
11.286
0
0
GO:0006325 establishment and/or maintenance of chromatin architecture
62MIT_005NFY
 
 
at_TSS
10
78
12.8
0.4
27.7
16.133
0
0
GO:0000786
63MIT_005NFY
 
 
at_TSS
10
86
11.6
0.4
25.13
15.311
0
0
GO:0006334 nucleosome assembly
64MIT_005NFY
 
 
at_TSS
10
95
10.5
0.4
22.75
14.51
0
0
GO:0031497 chromatin assembly
65MIT_005NFY
 
 
at_TSS
10
123
8.1
0.4
17.57
12.593
0
0
GO:0006461 protein complex assembly
66MIT_029
 
 
before_TSS
15
144
10.4
3.8
2.67
4.072
0
0.0592
GO:0005529 sugar binding
67TF_ARP1
 
 
before_TSS
20
237
8.4
2.5
3.3
5.801
0
0.0002
GO:0043207 response to external biotic stimulus
68TF_ARP1
 
 
before_TSS
20
221
9
2.5
3.54
6.179
0
0
GO:0009613 response to pest, pathogen or parasite
69TF_ARP1
 
 
before_TSS
10
101
9.9
2.5
3.87
4.701
0
0.0372
GO:0006954 inflammatory response
70TF_BRN
 
 
before_TSS
20
208
9.6
3.9
2.42
4.211
0
0.0845
GO:0030246 carbohydrate binding
71TF_BRN
 
 
before_TSS
17
144
11.8
3.9
2.97
4.849
0
0.0044
GO:0005529 sugar binding
72TF_CDP
 
 
before_TSS
19
208
9.1
3.4
2.67
4.573
0
0.0519
GO:0030246 carbohydrate binding
73TF_CDP
 
 
before_TSS
16
144
11.1
3.4
3.24
5.107
0
0.0017
GO:0005529 sugar binding
74TF_CEBP
 
 
at_TSS
10
179
5.5
0.5
10.56
9.399
0
0
GO:0006325 establishment and/or maintenance of chromatin architecture
75TF_CEBP
 
 
at_TSS
10
78
12.8
0.5
24.24
15.015
0
0
GO:0000786
76TF_CEBP
 
 
at_TSS
10
86
11.6
0.5
21.98
14.242
0
0
GO:0006334 nucleosome assembly
77TF_CEBP
 
 
at_TSS
10
95
10.5
0.5
19.9
13.488
0
0
GO:0031497 chromatin assembly
78TF_CEBP
 
 
at_TSS
10
188
5.3
0.5
10.05
9.127
0
0
GO:0006323 DNA packaging
79TF_CEBP
 
 
at_TSS
10
123
8.1
0.5
15.37
11.682
0
0
GO:0006461 protein complex assembly
80TF_CEBP
 
 
at_TSS
10
121
8.2
0.5
15.62
11.791
0
0
GO:0006333 chromatin assembly or disassembly
81TF_CLOX
 
 
before_TSS
16
144
11.1
3.6
3.07
4.853
0
0.0047
GO:0005529 sugar binding
82TF_GATA
 
 
before_TSS
10
90
11.1
3
3.66
4.486
0
0.0448
GO:0004497 monooxygenase activity
83TF_HAND
 
 
before_TSS
11
97
11.3
1.7
6.35
7.136
0
0
GO:0005179 hormone activity
84TF_LHX
 
 
before_TSS
13
97
13.4
4.2
3.16
4.497
0
0.0425
GO:0005179 hormone activity
85TF_LYF
 
 
before_TSS
12
136
8.8
2.2
3.96
5.251
0
0.0065
GO:0008234 cysteine-type peptidase activity
86TF_LYF
 
 
before_TSS
11
118
9.3
2.2
4.19
5.256
0
0.0063
GO:0004197 cysteine-type endopeptidase activity
87TF_NFY
 
 
at_TSS
19
208
9.1
1
8.84
11.657
0
0
GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
88TF_NFY
 
 
at_TSS
19
220
8.6
1
8.36
11.257
0
0
GO:0051276 chromosome organization and biogenesis
89TF_NFY
 
 
at_TSS
18
95
18.9
1
18.34
17.338
0
0
GO:0031497 chromatin assembly
90TF_NFY
 
 
at_TSS
18
188
9.5
1
9.27
11.674
0
0
GO:0006323 DNA packaging
91TF_NFY
 
 
at_TSS
18
121
14.8
1
14.4
15.137
0
0
GO:0006333 chromatin assembly or disassembly
92TF_NFY
 
 
at_TSS
18
86
20.9
1
20.26
18.315
0
0
GO:0006334 nucleosome assembly
93TF_NFY
 
 
at_TSS
18
78
23
1
22.34
19.318
0
0
GO:0000786
94TF_NFY
 
 
at_TSS
18
123
14.6
1
14.16
14.996
0
0
GO:0006461 protein complex assembly
95TF_NFY
 
 
at_TSS
18
179
10
1
9.73
12.029
0
0
GO:0006325 establishment and/or maintenance of chromatin architecture
96TF_NFY
 
 
at_TSS
12
88
13.6
1
13.2
11.736
0
0
GO:0005694
97TF_NFY
yes
 
at_TSS
10
95
10.5
0.2
43.93
20.587
0
0
GO:0031497 chromatin assembly
98TF_NFY
yes
 
at_TSS
10
179
5.5
0.2
23.31
14.74
0
0
GO:0006325 establishment and/or maintenance of chromatin architecture
99TF_NFY
yes
 
at_TSS
10
78
12.8
0.2
53.5
22.798
0
0
GO:0000786
100TF_NFY
yes
 
at_TSS
10
121
8.2
0.2
34.49
18.145
0
0
GO:0006333 chromatin assembly or disassembly
101TF_NFY
yes
 
at_TSS
10
123
8.1
0.2
33.93
17.989
0
0
GO:0006461 protein complex assembly
102TF_NFY
yes
 
at_TSS
10
86
11.6
0.2
48.52
21.677
0
0
GO:0006334 nucleosome assembly
103TF_NFY
yes
 
at_TSS
10
188
5.3
0.2
22.19
14.356
0
0
GO:0006323 DNA packaging
104TF_POLYA
 
 
before_TSS
16
144
11.1
4.1
2.65
4.17
0
0.0453
GO:0005529 sugar binding
105TF_POU6F
 
 
before_TSS
20
208
9.6
3.7
2.53
4.434
0
0.0571
GO:0030246 carbohydrate binding
106TF_POU6F
 
 
before_TSS
18
144
12.5
3.7
3.29
5.502
0
0.0005
GO:0005529 sugar binding
107TF_SOX9
 
 
before_TSS
31
397
7.8
3.5
2.18
4.614
0
0.0341
GO:0004175 endopeptidase activity
108TF_ZID
 
 
before_TSS
20
390
5.1
2.1
2.37
4.106
0
0.0915
GO:0006512 ubiquitin cycle