CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_POU6F

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_POU6F
TF_POU6F alone
In pair
with
1GO:0019222 regulation of metabolism
1541
before_TSS
92
yes
 
2GO:0006350 transcription
1461
before_TSS
90
yes
 
3GO:0031323 regulation of cellular metabolism
1510
before_TSS
90
yes
 
4GO:0019219 regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
1420
before_TSS
88
yes
 
5GO:0045449 regulation of transcription
1410
before_TSS
88
yes
 
6GO:0006351 transcription, DNA-dependent
1383
before_TSS
86
yes
 
7GO:0003677 DNA binding
1509
before_TSS
85
yes
 
8GO:0006355 regulation of transcription, DNA-dependent
1362
before_TSS
84
yes
 
9GO:0030528 transcription regulator activity
941
before_TSS
66
yes
 
10GO:0005529 sugar binding
144
at_TSS,before_TSS,after_TSS
57
yes
many
11GO:0048513 organ development
852
before_TSS
56
yes
 
12GO:0009653 morphogenesis
811
before_TSS
54
yes
 
13GO:0009607 response to biotic stimulus
483
at_TSS,after_TSS
52
yes
 
14GO:0009887 organ morphogenesis
674
before_TSS
52
yes
 
15GO:0009605 response to external stimulus
489
after_TSS
52
yes
 
16GO:0006952 defense response
463
at_TSS,after_TSS
49
yes
 
17GO:0003700 transcription factor activity
719
before_TSS
48
yes
 
18GO:0006955 immune response
379
at_TSS,after_TSS
37
yes
 
19GO:0008104 protein localization
508
before_TSS
36
 
TF_CREB, TF_ATF1,
20GO:0045184 establishment of protein localization
492
before_TSS
35
 
TF_CREB, TF_ATF1,
21GO:0015031 protein transport
476
before_TSS
34
 
TF_CREB, TF_ATF1,
22GO:0046907 intracellular transport
478
before_TSS
31
 
TF_ATF1,
23GO:0006886 intracellular protein transport
350
before_TSS
30
 
TF_CREB, TF_ATF1,
24GO:0030246 carbohydrate binding
208
before_TSS,after_TSS
26
yes
TF_POU3F, MIT_139FOXJ1, TF_CDX,
25GO:0043207 response to external biotic stimulus
237
at_TSS,after_TSS
25
yes
 
26GO:0007600 sensory perception
196
after_TSS
22
yes
 
27GO:0004857 enzyme inhibitor activity
155
after_TSS
20
yes
 
28GO:0007399 nervous system development
301
before_TSS
20
yes
 
29GO:0006605 protein targeting
141
before_TSS
17
 
TF_CREB, TF_ATF1,
30GO:0005179 hormone activity
97
after_TSS
14
yes
 
31GO:0009613 response to pest, pathogen or parasite
221
at_TSS
14
yes
 
32GO:0008202 steroid metabolism
90
before_TSS
14
yes
 
33GO:0004866 endopeptidase inhibitor activity
112
after_TSS
14
yes
 
34GO:0030414 protease inhibitor activity
112
after_TSS
14
yes
 
35GO:0009892 negative regulation of metabolism
149
before_TSS
13
yes
 
36GO:0008289 lipid binding
131
before_TSS
13
yes
 
37GO:0004867 serine-type endopeptidase inhibitor activity
77
after_TSS
13
yes
 
38GO:0003735 structural constituent of ribosome
172
at_TSS
11
yes
 
39GO:0007389 pattern specification
128
before_TSS
11
yes
 
40GO:0045934 negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
121
before_TSS
11
yes
 
41GO:0016481 negative regulation of transcription
115
before_TSS
11
yes
 
42GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
85
before_TSS
11
 
TF_CHX,
43GO:0004497 monooxygenase activity
90
before_TSS
11
 
TF_MEIS,
44GO:0009888 histogenesis
112
before_TSS
11
yes
 
45GO:0031324 negative regulation of cellular metabolism
132
before_TSS
11
yes
 
46GO:0045892 negative regulation of transcription, DNA-dependent
82
before_TSS
10
yes
 
47GO:0001501 skeletal development
87
before_TSS
10
yes
 
48GO:0016853 isomerase activity
118
before_TSS
10
 
TF_SREBP,

Pairs of TF_POU6F binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1TF_ATF1
before_TSS
6
GO:0008104 protein localization
32
508
2TF_CREB
before_TSS
5
GO:0008104 protein localization
36
508
3TF_POU3F
before_TSS
2
GO:0030246 carbohydrate binding
20
208
4MIT_139FOXJ1
before_TSS
2
GO:0030246 carbohydrate binding
11
208
5MIT_029
before_TSS
1
GO:0005529 sugar binding
13
144
6TF_STAT
before_TSS
1
GO:0005529 sugar binding
13
144
7TF_SREBP
before_TSS
1
GO:0016853 isomerase activity
10
118
8TF_CHX
before_TSS
1
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
11
85
9MIT_051TATA
before_TSS
1
GO:0005529 sugar binding
18
144
10TF_CDX
before_TSS
1
GO:0030246 carbohydrate binding
12
208
11TF_TATA
before_TSS
1
GO:0005529 sugar binding
12
144
12TF_MEIS
before_TSS
1
GO:0004497 monooxygenase activity
11
90
13TF_YY1
before_TSS
1
GO:0005529 sugar binding
10
144
14TF_BRN
before_TSS
1
GO:0005529 sugar binding
15
144

Details on Gene Ontology terms for targets of TF_POU6F

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
yes
before_TSS
92
1541
5.9
3.7
1.6
5.025
0
0
GO:0019222 regulation of metabolism
2none
 
yes
before_TSS
90
1510
5.9
3.7
1.6
4.945
0
0
GO:0031323 regulation of cellular metabolism
3none
 
yes
before_TSS
90
1461
6.1
3.7
1.66
5.284
0
0
GO:0006350 transcription
4none
 
yes
before_TSS
88
1420
6.1
3.7
1.67
5.278
0
0
GO:0019219 regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
5none
 
yes
before_TSS
88
1410
6.2
3.7
1.68
5.35
0
0
GO:0045449 regulation of transcription
6none
 
yes
before_TSS
86
1383
6.2
3.7
1.67
5.244
0
0
GO:0006351 transcription, DNA-dependent
7none
 
yes
before_TSS
85
1509
5.6
3.7
1.51
4.224
0
0.0001
GO:0003677 DNA binding
8none
 
yes
before_TSS
84
1362
6.1
3.7
1.66
5.093
0
0
GO:0006355 regulation of transcription, DNA-dependent
9none
 
yes
before_TSS
66
941
7
3.7
1.89
5.583
0
0
GO:0030528 transcription regulator activity
10none
 
 
before_TSS
57
144
39.5
26
1.51
3.716
0.0002
0.0246
GO:0005529 sugar binding
11none
 
yes
before_TSS
56
852
6.5
3.7
1.77
4.585
0
0
GO:0048513 organ development
12none
 
yes
before_TSS
54
811
6.6
3.7
1.79
4.599
0
0
GO:0009653 morphogenesis
13none
 
 
after_TSS
52
483
10.7
6.1
1.73
4.25
0
0.0005
GO:0009607 response to biotic stimulus
14none
 
 
after_TSS
52
489
10.6
6.1
1.71
4.154
0
0.0005
GO:0009605 response to external stimulus
15none
 
yes
before_TSS
52
674
7.7
3.7
2.07
5.661
0
0
GO:0009887 organ morphogenesis
16none
 
 
after_TSS
49
463
10.5
6.1
1.7
3.991
0
0.001
GO:0006952 defense response
17none
 
yes
before_TSS
48
719
6.6
3.7
1.79
4.338
0
0.0001
GO:0003700 transcription factor activity
18none
 
 
after_TSS
38
356
10.6
6.1
1.72
3.556
0.0003
0.0045
GO:0005576
19none
 
 
after_TSS
37
379
9.7
6.1
1.57
2.925
0.0034
0.035
GO:0006955 immune response
20none
 
 
at_TSS
30
483
6.2
2.9
2.11
4.34
0
0.0002
GO:0009607 response to biotic stimulus
21none
 
 
at_TSS
29
463
6.2
2.9
2.12
4.313
0
0.0002
GO:0006952 defense response
22none
 
yes
before_TSS
26
302
8.6
3.7
2.32
4.561
0
0
GO:0005667
23none
 
 
after_TSS
26
208
12.5
6.1
2.01
3.803
0.0001
0.0065
GO:0030246 carbohydrate binding
24none
 
 
after_TSS
25
237
10.5
6.1
1.7
2.806
0.005
0.0382
GO:0043207 response to external biotic stimulus
25none
yes
 
before_TSS
23
144
15.9
5.8
2.73
5.222
0
0
GO:0005529 sugar binding
26none
 
 
after_TSS
22
196
11.2
6.1
1.81
2.943
0.0032
0.0495
GO:0007600 sensory perception
27none
 
 
at_TSS
22
356
6.1
2.9
2.1
3.67
0.0002
0.0044
GO:0005576
28none
 
 
after_TSS
22
144
15.2
6.1
2.46
4.546
0
0.0003
GO:0005529 sugar binding
29none
 
 
at_TSS
20
379
5.2
2.9
1.79
2.734
0.0062
0.0449
GO:0006955 immune response
30none
 
 
after_TSS
20
155
12.9
6.1
2.08
3.485
0.0004
0.018
GO:0004857 enzyme inhibitor activity
31none
 
yes
before_TSS
20
301
6.6
3.7
1.79
2.727
0.0063
0.0324
GO:0007399 nervous system development
32none
 
 
at_TSS
16
237
6.7
2.9
2.29
3.505
0.0004
0.0069
GO:0043207 response to external biotic stimulus
33none
yes
 
before_TSS
14
90
15.5
5.8
2.66
3.949
0
0.0143
GO:0008202 steroid metabolism
34none
 
 
after_TSS
14
112
12.5
6.1
2.01
2.779
0.0054
0.0739
GO:0004866 endopeptidase inhibitor activity
35none
 
 
after_TSS
14
97
14.4
6.1
2.32
3.377
0.0007
0.0121
GO:0005179 hormone activity
36none
 
 
after_TSS
14
112
12.5
6.1
2.01
2.779
0.0054
0.0739
GO:0030414 protease inhibitor activity
37none
 
 
at_TSS
14
221
6.3
2.9
2.15
3.013
0.0025
0.0305
GO:0009613 response to pest, pathogen or parasite
38none
 
 
after_TSS
13
77
16.8
6.1
2.72
3.901
0
0.0043
GO:0004867 serine-type endopeptidase inhibitor activity
39none
 
yes
before_TSS
13
149
8.7
3.7
2.35
3.258
0.0011
0.0256
GO:0009892 negative regulation of metabolism
40none
 
yes
before_TSS
13
131
9.9
3.7
2.67
3.783
0.0001
0.0567
GO:0008289 lipid binding
41none
 
yes
before_TSS
11
112
9.8
3.7
2.64
3.437
0.0005
0.043
GO:0009888 histogenesis
42none
 
yes
before_TSS
11
115
9.5
3.7
2.57
3.338
0.0008
0.0193
GO:0016481 negative regulation of transcription
43none
 
yes
before_TSS
11
128
8.5
3.7
2.31
2.938
0.0033
0.0228
GO:0007389 pattern specification
44none
 
 
at_TSS
11
172
6.3
2.9
2.17
2.7
0.0069
0.0976
GO:0003735 structural constituent of ribosome
45none
 
yes
before_TSS
11
132
8.3
3.7
2.24
2.825
0.0047
0.0786
GO:0031324 negative regulation of cellular metabolism
46none
 
yes
before_TSS
11
121
9
3.7
2.45
3.147
0.0016
0.0317
GO:0045934 negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
47none
 
yes
before_TSS
10
82
12.1
3.7
3.28
4.079
0
0.0041
GO:0045892 negative regulation of transcription, DNA-dependent
48none
 
 
at_TSS
10
144
6.9
2.9
2.36
2.859
0.0042
0.0707
GO:0005529 sugar binding
49none
 
yes
before_TSS
10
87
11.4
3.7
3.09
3.855
0.0001
0.006
GO:0001501 skeletal development
50none
 
 
at_TSS
10
136
7.3
2.9
2.49
3.061
0.0022
0.0576
GO:0005840
51MIT_029
 
 
before_TSS
13
144
9
2.9
3.02
4.289
0
0.0298
GO:0005529 sugar binding
52MIT_051TATA
 
 
before_TSS
18
144
12.5
4.6
2.66
4.464
0
0.0182
GO:0005529 sugar binding
53MIT_139FOXJ1
 
 
before_TSS
11
208
5.2
1.4
3.59
4.613
0
0.0571
GO:0030246 carbohydrate binding
54MIT_139FOXJ1
 
 
before_TSS
11
144
7.6
1.4
5.19
6.185
0
0
GO:0005529 sugar binding
55TF_ATF1
 
 
before_TSS
32
508
6.2
2.7
2.31
5.07
0
0.0085
GO:0008104 protein localization
56TF_ATF1
 
 
before_TSS
31
478
6.4
2.7
2.38
5.167
0
0.0102
GO:0046907 intracellular transport
57TF_ATF1
 
 
before_TSS
31
492
6.3
2.7
2.31
4.988
0
0.0131
GO:0045184 establishment of protein localization
58TF_ATF1
 
 
before_TSS
30
476
6.3
2.7
2.31
4.905
0
0.0201
GO:0015031 protein transport
59TF_ATF1
 
 
before_TSS
27
350
7.7
2.7
2.83
5.832
0
0.0002
GO:0006886 intracellular protein transport
60TF_ATF1
 
 
before_TSS
16
141
11.3
2.7
4.17
6.337
0
0
GO:0006605 protein targeting
61TF_BRN
 
 
before_TSS
15
144
10.4
3.2
3.19
4.871
0
0.0047
GO:0005529 sugar binding
62TF_CDX
 
 
before_TSS
12
208
5.7
1.7
3.3
4.474
0
0.0552
GO:0030246 carbohydrate binding
63TF_CHX
 
 
before_TSS
11
85
12.9
3.5
3.67
4.729
0
0.0975
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
64TF_CREB
 
 
before_TSS
36
508
7
3.2
2.16
4.937
0
0.0114
GO:0008104 protein localization
65TF_CREB
 
 
before_TSS
35
492
7.1
3.2
2.17
4.89
0
0.0145
GO:0045184 establishment of protein localization
66TF_CREB
 
 
before_TSS
34
476
7.1
3.2
2.18
4.843
0
0.0184
GO:0015031 protein transport
67TF_CREB
 
 
before_TSS
30
350
8.5
3.2
2.61
5.655
0
0.0003
GO:0006886 intracellular protein transport
68TF_CREB
 
 
before_TSS
17
141
12
3.2
3.68
5.897
0
0
GO:0006605 protein targeting
69TF_MEIS
 
 
before_TSS
11
90
12.2
2.9
4.15
5.23
0
0.0024
GO:0004497 monooxygenase activity
70TF_MRF2
 
 
before_TSS
13
136
9.5
2.9
3.26
4.617
0
0.056
GO:0005840
71TF_POU3F
 
 
before_TSS
20
208
9.6
3.7
2.53
4.434
0
0.0571
GO:0030246 carbohydrate binding
72TF_POU3F
 
 
before_TSS
18
144
12.5
3.7
3.29
5.502
0
0.0005
GO:0005529 sugar binding
73TF_SREBP
 
 
before_TSS
10
118
8.4
2
4.16
4.983
0
0.0135
GO:0016853 isomerase activity
74TF_STAT
 
 
before_TSS
13
144
9
2.2
3.93
5.423
0
0.0006
GO:0005529 sugar binding
75TF_TATA
 
 
before_TSS
12
144
8.3
2.7
3.05
4.155
0
0.0468
GO:0005529 sugar binding
76TF_YY1
 
 
before_TSS
10
144
6.9
2.1
3.23
3.993
0
0.0762
GO:0005529 sugar binding