CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_RORA

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_RORA
TF_RORA alone
In pair
with
1GO:0006950 response to stress
546
at_TSS
53
yes
 
2GO:0009607 response to biotic stimulus
483
at_TSS
52
yes
 
3GO:0006952 defense response
463
at_TSS
49
yes
 
4GO:0009605 response to external stimulus
489
at_TSS
49
yes
 
5GO:0015399 primary active transporter activity
168
at_TSS,after_TSS
47
yes
TF_ELK,
6GO:0030246 carbohydrate binding
208
before_TSS,after_TSS
46
yes
TF_CP2, TF_MAF,
7GO:0051186 cofactor metabolism
181
at_TSS,after_TSS
45
yes
many
8GO:0006955 immune response
379
at_TSS
41
yes
 
9GO:0006732 coenzyme metabolism
159
after_TSS
40
yes
TF_AP2, TF_AP2A, ADD_LRH,
10GO:0015077 monovalent inorganic cation transporter activity
138
after_TSS
38
yes
many
11GO:0005125 cytokine activity
173
after_TSS
38
yes
 
12GO:0015078 hydrogen ion transporter activity
133
after_TSS
37
yes
many
13GO:0005529 sugar binding
144
before_TSS,after_TSS
33
yes
TF_POLYA, TF_MAF,
14GO:0043207 response to external biotic stimulus
237
at_TSS
31
yes
 
15GO:0051188 cofactor biosynthesis
106
after_TSS
30
yes
TF_ELK,
16GO:0009613 response to pest, pathogen or parasite
221
at_TSS
29
yes
 
17GO:0015405 P-P-bond-hydrolysis-driven transporter activity
113
after_TSS
28
yes
 
18GO:0009108 coenzyme biosynthesis
94
after_TSS
26
yes
 
19GO:0005386 carrier activity
394
after_TSS
21
 
TF_ELK,
20GO:0006119 oxidative phosphorylation
67
after_TSS
20
yes
 
21GO:0006752 group transfer coenzyme metabolism
75
after_TSS
20
yes
 
22GO:0044262 cellular carbohydrate metabolism
205
after_TSS
15
 
TF_AP2, TF_AP2A, ADD_LRH,
23GO:0006954 inflammatory response
101
at_TSS
14
yes
 
24GO:0004295 trypsin activity
101
at_TSS
13
yes
 
25GO:0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor
34
after_TSS
12
yes
 
26GO:0004263 chymotrypsin activity
90
at_TSS
12
yes
 
27GO:0001501 skeletal development
87
after_TSS
12
yes
 
28GO:0003954 NADH dehydrogenase activity
32
after_TSS
11
yes
 
29GO:0015081 sodium ion transporter activity
32
after_TSS
11
yes
 
30GO:0006163 purine nucleotide metabolism
92
after_TSS
11
yes
 
31GO:0009144 purine nucleoside triphosphate metabolism
76
after_TSS
11
yes
 
32GO:0050136 NADH dehydrogenase (quinone) activity
32
after_TSS
11
yes
 
33GO:0009259 ribonucleotide metabolism
90
after_TSS
11
yes
 
34GO:0009141 nucleoside triphosphate metabolism
81
after_TSS
11
yes
 
35GO:0009100 glycoprotein metabolism
69
before_TSS
11
yes
 
36GO:0009199 ribonucleoside triphosphate metabolism
74
after_TSS
11
yes
 
37GO:0009117 nucleotide metabolism
175
at_TSS
11
yes
 
38GO:0008137 NADH dehydrogenase (ubiquinone) activity
32
after_TSS
11
yes
 
39GO:0009150 purine ribonucleotide metabolism
85
after_TSS
11
yes
 
40GO:0009205 purine ribonucleoside triphosphate metabolism
74
after_TSS
11
yes
 
41GO:0009152 purine ribonucleotide biosynthesis
80
after_TSS
10
yes
 
42GO:0046034 ATP metabolism
63
after_TSS
10
yes
 
43GO:0009201 ribonucleoside triphosphate biosynthesis
71
after_TSS
10
yes
 
44GO:0009206 purine ribonucleoside triphosphate biosynthesis
71
after_TSS
10
yes
 
45GO:0009145 purine nucleoside triphosphate biosynthesis
71
after_TSS
10
yes
 
46GO:0009142 nucleoside triphosphate biosynthesis
74
after_TSS
10
yes
 

Pairs of TF_RORA binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1TF_ELK
after_TSS
6
GO:0005386 carrier activity
21
394
2TF_AP2A
after_TSS
5
GO:0044262 cellular carbohydrate metabolism
15
205
3TF_AP2
after_TSS
5
GO:0044262 cellular carbohydrate metabolism
15
205
4ADD_LRH
after_TSS
3
GO:0051186 cofactor metabolism
13
181
5TF_MAF
before_TSS
2
GO:0030246 carbohydrate binding
13
208
6TF_OLF1
after_TSS
2
GO:0015077 monovalent inorganic cation transporter activity
10
138
7TF_CREB
after_TSS
2
GO:0015077 monovalent inorganic cation transporter activity
10
138
8TF_CP2
after_TSS
1
GO:0030246 carbohydrate binding
12
208
9TF_GABP
after_TSS
1
GO:0015077 monovalent inorganic cation transporter activity
10
138
10TF_POLYA
before_TSS
1
GO:0005529 sugar binding
13
144

Details on Gene Ontology terms for targets of TF_RORA

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
 
after_TSS
128
547
23.4
13.6
1.71
6.775
0
0
GO:0005739
2none
 
 
after_TSS
76
356
21.3
13.6
1.56
4.277
0
0.0005
GO:0005576
3none
 
 
at_TSS
53
546
9.7
6.2
1.56
3.45
0.0005
0.0205
GO:0006950 response to stress
4none
 
 
at_TSS
52
483
10.7
6.2
1.73
4.219
0
0.0004
GO:0009607 response to biotic stimulus
5none
 
 
at_TSS
52
547
9.5
6.2
1.52
3.254
0.0011
0.0189
GO:0005739
6none
 
 
at_TSS
49
489
10
6.2
1.61
3.55
0.0003
0.0054
GO:0009605 response to external stimulus
7none
 
 
at_TSS
49
463
10.5
6.2
1.7
3.961
0
0.0011
GO:0006952 defense response
8none
 
 
after_TSS
47
168
27.9
13.6
2.04
5.433
0
0
GO:0015399 primary active transporter activity
9none
 
 
after_TSS
46
208
22.1
13.6
1.61
3.573
0.0003
0.0129
GO:0030246 carbohydrate binding
10none
 
 
after_TSS
45
181
24.8
13.6
1.81
4.413
0
0.0009
GO:0051186 cofactor metabolism
11none
 
 
at_TSS
43
356
12
6.2
1.94
4.643
0
0.0001
GO:0005576
12none
 
 
at_TSS
41
379
10.8
6.2
1.73
3.763
0.0001
0.0027
GO:0006955 immune response
13none
 
 
after_TSS
40
159
25.1
13.6
1.83
4.242
0
0.002
GO:0006732 coenzyme metabolism
14none
 
 
after_TSS
38
173
21.9
13.6
1.6
3.196
0.0013
0.0637
GO:0005125 cytokine activity
15none
 
 
after_TSS
38
138
27.5
13.6
2.01
4.766
0
0.0001
GO:0015077 monovalent inorganic cation transporter activity
16none
 
 
after_TSS
37
133
27.8
13.6
2.03
4.774
0
0.0001
GO:0015078 hydrogen ion transporter activity
17none
 
 
after_TSS
33
144
22.9
13.6
1.67
3.247
0.0011
0.0203
GO:0005529 sugar binding
18none
 
 
at_TSS
31
237
13
6.2
2.1
4.414
0
0.0003
GO:0043207 response to external biotic stimulus
19none
 
 
after_TSS
30
106
28.3
13.6
2.06
4.402
0
0.0013
GO:0051188 cofactor biosynthesis
20none
 
 
at_TSS
29
221
13.1
6.2
2.1
4.286
0
0.0005
GO:0009613 response to pest, pathogen or parasite
21none
 
 
after_TSS
28
113
24.7
13.6
1.81
3.451
0.0005
0.0681
GO:0015405 P-P-bond-hydrolysis-driven transporter activity
22none
 
 
after_TSS
26
94
27.6
13.6
2.02
3.961
0
0.0091
GO:0009108 coenzyme biosynthesis
23none
 
 
after_TSS
21
53
39.6
13.6
2.89
5.51
0
0
GO:0019866
24none
 
 
after_TSS
21
60
35
13.6
2.55
4.819
0
0.0005
GO:0005743
25none
 
 
after_TSS
20
75
26.6
13.6
1.95
3.284
0.001
0.0936
GO:0006752 group transfer coenzyme metabolism
26none
 
 
after_TSS
20
67
29.8
13.6
2.18
3.864
0.0001
0.0102
GO:0006119 oxidative phosphorylation
27none
yes
 
before_TSS
19
144
13.1
6.1
2.14
3.535
0.0004
0.0373
GO:0005529 sugar binding
28none
 
 
at_TSS
14
101
13.8
6.2
2.22
3.191
0.0014
0.0399
GO:0006954 inflammatory response
29none
 
 
at_TSS
13
101
12.8
6.2
2.06
2.778
0.0054
0.08
GO:0004295 trypsin activity
30none
 
 
after_TSS
12
34
35.2
13.6
2.58
3.674
0.0002
0.0291
GO:0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor
31none
 
 
at_TSS
12
90
13.3
6.2
2.14
2.803
0.005
0.0686
GO:0004263 chymotrypsin activity
32none
 
yes
after_TSS
12
87
13.7
4.2
3.22
4.399
0
0.0019
GO:0001501 skeletal development
33none
 
yes
after_TSS
11
76
14.4
4.2
3.38
4.404
0
0.0038
GO:0009144 purine nucleoside triphosphate metabolism
34none
 
 
after_TSS
11
32
34.3
13.6
2.51
3.412
0.0006
0.059
GO:0015081 sodium ion transporter activity
35none
 
yes
at_TSS
11
168
6.5
1.9
3.27
4.24
0
0.004
GO:0015399 primary active transporter activity
36none
 
yes
at_TSS
11
175
6.2
1.9
3.14
4.08
0
0.0164
GO:0009117 nucleotide metabolism
37none
 
 
after_TSS
11
32
34.3
13.6
2.51
3.412
0.0006
0.059
GO:0008137 NADH dehydrogenase (ubiquinone) activity
38none
 
 
after_TSS
11
32
34.3
13.6
2.51
3.412
0.0006
0.059
GO:0003954 NADH dehydrogenase activity
39none
 
yes
at_TSS
11
181
6
1.9
3.03
3.948
0
0.0144
GO:0051186 cofactor metabolism
40none
 
yes
after_TSS
11
81
13.5
4.2
3.17
4.149
0
0.0122
GO:0009141 nucleoside triphosphate metabolism
41none
 
yes
before_TSS
11
69
15.9
5.3
2.96
3.9
0
0.0352
GO:0009100 glycoprotein metabolism
42none
 
yes
after_TSS
11
74
14.8
4.2
3.47
4.512
0
0.0023
GO:0009205 purine ribonucleoside triphosphate metabolism
43none
 
yes
after_TSS
11
90
12.2
4.2
2.85
3.736
0.0001
0.0684
GO:0009259 ribonucleotide metabolism
44none
 
yes
after_TSS
11
74
14.8
4.2
3.47
4.512
0
0.0023
GO:0009199 ribonucleoside triphosphate metabolism
45none
 
 
after_TSS
11
32
34.3
13.6
2.51
3.412
0.0006
0.059
GO:0050136 NADH dehydrogenase (quinone) activity
46none
 
yes
after_TSS
11
92
11.9
4.2
2.79
3.651
0.0002
0.0956
GO:0006163 purine nucleotide metabolism
47none
 
yes
after_TSS
11
85
12.9
4.2
3.02
3.958
0
0.0276
GO:0009150 purine ribonucleotide metabolism
48none
 
yes
after_TSS
10
71
14
4.2
3.29
4.093
0
0.0155
GO:0009206 purine ribonucleoside triphosphate biosynthesis
49none
 
yes
after_TSS
10
71
14
4.2
3.29
4.093
0
0.0155
GO:0009201 ribonucleoside triphosphate biosynthesis
50none
 
yes
after_TSS
10
63
15.8
4.2
3.7
4.557
0
0.0018
GO:0046034 ATP metabolism
51none
 
yes
after_TSS
10
71
14
4.2
3.29
4.093
0
0.0155
GO:0009145 purine nucleoside triphosphate biosynthesis
52none
 
yes
after_TSS
10
74
13.5
4.2
3.15
3.936
0
0.0303
GO:0009142 nucleoside triphosphate biosynthesis
53none
 
yes
after_TSS
10
80
12.5
4.2
2.92
3.644
0.0002
0.0982
GO:0009152 purine ribonucleotide biosynthesis
54ADD_LRH
 
 
after_TSS
13
159
8.1
1.6
5.02
6.568
0
0
GO:0006732 coenzyme metabolism
55ADD_LRH
 
 
after_TSS
13
181
7.1
1.6
4.41
5.95
0
0.0001
GO:0051186 cofactor metabolism
56ADD_LRH
 
 
after_TSS
12
205
5.8
1.6
3.59
4.822
0
0.0614
GO:0044262 cellular carbohydrate metabolism
57TF_AP2
 
 
after_TSS
15
205
7.3
2.3
3.09
4.709
0
0.0358
GO:0044262 cellular carbohydrate metabolism
58TF_AP2
 
 
after_TSS
14
181
7.7
2.3
3.27
4.793
0
0.0118
GO:0051186 cofactor metabolism
59TF_AP2
 
 
after_TSS
13
159
8.1
2.3
3.45
4.857
0
0.0073
GO:0006732 coenzyme metabolism
60TF_AP2
 
 
after_TSS
13
138
9.4
2.3
3.98
5.489
0
0.0002
GO:0015077 monovalent inorganic cation transporter activity
61TF_AP2
 
 
after_TSS
12
133
9
2.3
3.81
5.084
0
0.0031
GO:0015078 hydrogen ion transporter activity
62TF_AP2A
 
 
after_TSS
15
205
7.3
2.3
3.12
4.757
0
0.0424
GO:0044262 cellular carbohydrate metabolism
63TF_AP2A
 
 
after_TSS
14
181
7.7
2.3
3.3
4.84
0
0.0112
GO:0051186 cofactor metabolism
64TF_AP2A
 
 
after_TSS
13
138
9.4
2.3
4.02
5.536
0
0.0002
GO:0015077 monovalent inorganic cation transporter activity
65TF_AP2A
 
 
after_TSS
13
159
8.1
2.3
3.49
4.903
0
0.0067
GO:0006732 coenzyme metabolism
66TF_AP2A
 
 
after_TSS
12
133
9
2.3
3.85
5.129
0
0.0031
GO:0015078 hydrogen ion transporter activity
67TF_CP2
 
 
after_TSS
12
208
5.7
1.4
4.05
5.344
0
0.0007
GO:0030246 carbohydrate binding
68TF_CREB
 
 
after_TSS
10
133
7.5
1.8
4.11
4.93
0
0.005
GO:0015078 hydrogen ion transporter activity
69TF_CREB
 
 
after_TSS
10
138
7.2
1.8
3.96
4.782
0
0.0093
GO:0015077 monovalent inorganic cation transporter activity
70TF_ELK
 
 
after_TSS
21
394
5.3
1.9
2.68
4.844
0
0.0274
GO:0005386 carrier activity
71TF_ELK
 
 
after_TSS
15
168
8.9
1.9
4.5
6.502
0
0
GO:0015399 primary active transporter activity
72TF_ELK
 
 
after_TSS
13
138
9.4
1.9
4.75
6.302
0
0
GO:0015077 monovalent inorganic cation transporter activity
73TF_ELK
 
 
after_TSS
12
181
6.6
1.9
3.34
4.517
0
0.0301
GO:0051186 cofactor metabolism
74TF_ELK
 
 
after_TSS
12
133
9
1.9
4.54
5.855
0
0.0001
GO:0015078 hydrogen ion transporter activity
75TF_ELK
 
 
after_TSS
10
106
9.4
1.9
4.75
5.526
0
0.0014
GO:0051188 cofactor biosynthesis
76TF_GABP
 
 
after_TSS
10
138
7.2
1.3
5.28
5.967
0
0
GO:0015077 monovalent inorganic cation transporter activity
77TF_MAF
 
 
before_TSS
13
208
6.2
2
3.08
4.364
0
0.0551
GO:0030246 carbohydrate binding
78TF_MAF
 
 
before_TSS
10
144
6.9
2
3.43
4.217
0
0.0382
GO:0005529 sugar binding
79TF_OLF1
 
 
after_TSS
10
138
7.2
1.4
4.89
5.644
0
0.0001
GO:0015077 monovalent inorganic cation transporter activity
80TF_OLF1
 
 
after_TSS
10
133
7.5
1.4
5.08
5.802
0
0
GO:0015078 hydrogen ion transporter activity
81TF_POLYA
 
 
before_TSS
13
144
9
2.7
3.23
4.568
0
0.0125
GO:0005529 sugar binding