CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_RP58

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_RP58
TF_RP58 alone
In pair
with
1GO:0009605 response to external stimulus
489
after_TSS
78
yes
 
2GO:0009056 catabolism
804
at_TSS
59
yes
 
3GO:0004930 G-protein coupled receptor activity
357
after_TSS
58
yes
 
4GO:0001584 rhodopsin-like receptor activity
283
after_TSS
50
yes
 
5GO:0043207 response to external biotic stimulus
237
after_TSS
40
yes
 
6GO:0009613 response to pest, pathogen or parasite
221
after_TSS
38
yes
 
7GO:0006954 inflammatory response
101
after_TSS
22
yes
 
8GO:0004497 monooxygenase activity
90
after_TSS
22
yes
 
9GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
91
after_TSS
20
yes
 
10GO:0006935 chemotaxis
79
after_TSS
18
yes
 
11GO:0042330 taxis
79
after_TSS
18
yes
 
12GO:0007399 nervous system development
301
after_TSS
18
yes
 
13GO:0008236 serine-type peptidase activity
158
at_TSS
17
yes
 
14GO:0007606 sensory perception of chemical stimulus
40
after_TSS
17
yes
 
15GO:0007608 perception of smell
37
after_TSS
16
yes
 
16GO:0004252 serine-type endopeptidase activity
140
at_TSS
16
yes
 
17GO:0004867 serine-type endopeptidase inhibitor activity
77
after_TSS
16
yes
 
18GO:0004984 olfactory receptor activity
28
after_TSS
15
yes
 
19GO:0004263 chymotrypsin activity
90
at_TSS
14
yes
 
20GO:0004295 trypsin activity
101
at_TSS
14
yes
 
21GO:0000287 magnesium ion binding
180
before_TSS
13
 
TF_RFX,
22GO:0008237 metallopeptidase activity
177
before_TSS
12
 
TF_MEISHOX,
23GO:0030246 carbohydrate binding
208
after_TSS
11
 
TF_MEIS,
24GO:0004222 metalloendopeptidase activity
99
before_TSS
10
 
TF_MEISHOX,
25GO:0016741 transferase activity, transferring one-carbon groups
101
before_TSS
10
 
TF_COUP,
26GO:0008168 methyltransferase activity
98
before_TSS
10
 
TF_COUP,

Pairs of TF_RP58 binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1TF_COUP
before_TSS
2
GO:0016741 transferase activity, transferring one-carbon groups
10
101
2TF_MEISHOX
before_TSS
2
GO:0008237 metallopeptidase activity
12
177
3TF_RFX
before_TSS
1
GO:0000287 magnesium ion binding
13
180
4TF_MEIS
after_TSS
1
GO:0030246 carbohydrate binding
11
208

Details on Gene Ontology terms for targets of TF_RP58

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
 
after_TSS
78
489
15.9
10.6
1.5
3.908
0
0.001
GO:0009605 response to external stimulus
2none
 
 
at_TSS
59
804
7.3
4.7
1.56
3.655
0.0002
0.0313
GO:0009056 catabolism
3none
 
 
after_TSS
58
357
16.2
10.6
1.53
3.504
0.0004
0.0098
GO:0004930 G-protein coupled receptor activity
4none
 
 
after_TSS
50
283
17.6
10.6
1.66
3.895
0
0.0039
GO:0001584 rhodopsin-like receptor activity
5none
 
 
after_TSS
40
237
16.8
10.6
1.58
3.159
0.0015
0.0186
GO:0043207 response to external biotic stimulus
6none
 
 
after_TSS
38
221
17.1
10.6
1.61
3.203
0.0013
0.0165
GO:0009613 response to pest, pathogen or parasite
7none
 
 
at_TSS
30
356
8.4
4.7
1.79
3.37
0.0007
0.0094
GO:0005576
8none
 
 
after_TSS
22
90
24.4
10.6
2.3
4.273
0
0.001
GO:0004497 monooxygenase activity
9none
 
 
after_TSS
22
101
21.7
10.6
2.05
3.657
0.0002
0.0233
GO:0006954 inflammatory response
10none
 
 
after_TSS
20
91
21.9
10.6
2.07
3.531
0.0004
0.0303
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
11none
 
 
after_TSS
18
79
22.7
10.6
2.14
3.522
0.0004
0.0313
GO:0006935 chemotaxis
12none
 
yes
after_TSS
18
301
5.9
3.2
1.81
2.64
0.0082
0.0798
GO:0007399 nervous system development
13none
 
 
after_TSS
18
79
22.7
10.6
2.14
3.522
0.0004
0.0313
GO:0042330 taxis
14none
 
 
after_TSS
17
40
42.5
10.6
4
6.556
0
0
GO:0007606 sensory perception of chemical stimulus
15none
 
 
at_TSS
17
158
10.7
4.7
2.28
3.621
0.0002
0.0134
GO:0008236 serine-type peptidase activity
16none
 
 
after_TSS
16
37
43.2
10.6
4.07
6.451
0
0
GO:0007608 perception of smell
17none
 
 
at_TSS
16
140
11.4
4.7
2.43
3.782
0.0001
0.0081
GO:0004252 serine-type endopeptidase activity
18none
 
 
after_TSS
16
77
20.7
10.6
1.95
2.903
0.0036
0.0901
GO:0004867 serine-type endopeptidase inhibitor activity
19none
 
 
after_TSS
15
28
53.5
10.6
5.04
7.386
0
0
GO:0004984 olfactory receptor activity
20none
 
 
at_TSS
14
90
15.5
4.7
3.3
4.882
0
0
GO:0004263 chymotrypsin activity
21none
 
 
at_TSS
14
101
13.8
4.7
2.94
4.367
0
0.0006
GO:0004295 trypsin activity
22TF_COUP
 
 
before_TSS
10
98
10.2
2.3
4.33
5.145
0
0.0115
GO:0008168 methyltransferase activity
23TF_COUP
 
 
before_TSS
10
101
9.9
2.3
4.2
5.022
0
0.022
GO:0016741 transferase activity, transferring one-carbon groups
24TF_MEIS
 
 
after_TSS
11
208
5.2
1.3
3.78
4.825
0
0.0086
GO:0030246 carbohydrate binding
25TF_MEISHOX
 
 
before_TSS
12
177
6.7
1.6
4
5.282
0
0.0055
GO:0008237 metallopeptidase activity
26TF_MEISHOX
 
 
before_TSS
11
181
6
1.6
3.58
4.604
0
0.0895
GO:0005578
27TF_MEISHOX
 
 
before_TSS
10
99
10.1
1.6
5.96
6.509
0
0
GO:0004222 metalloendopeptidase activity
28TF_RFX
 
 
before_TSS
13
180
7.2
2.1
3.32
4.68
0
0.0619
GO:0000287 magnesium ion binding
29TF_TGIF
 
 
before_TSS
12
181
6.6
1.7
3.71
4.96
0
0.0304
GO:0005578