CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_S8

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_S8
TF_S8 alone
In pair
with
1GO:0019222 regulation of metabolism
1541
before_TSS
121
yes
 
2GO:0031323 regulation of cellular metabolism
1510
before_TSS
119
yes
 
3GO:0019219 regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
1420
before_TSS
112
yes
 
4GO:0045449 regulation of transcription
1410
before_TSS
112
yes
 
5GO:0006351 transcription, DNA-dependent
1383
before_TSS
111
yes
 
6GO:0006355 regulation of transcription, DNA-dependent
1362
before_TSS
109
yes
 
7GO:0030528 transcription regulator activity
941
before_TSS
84
yes
 
8GO:0050896 response to stimulus
1020
at_TSS
80
yes
 
9GO:0048513 organ development
852
before_TSS
78
yes
 
10GO:0009653 morphogenesis
811
before_TSS
76
yes
 
11GO:0050874 organismal physiological process
881
at_TSS
71
yes
 
12GO:0009887 organ morphogenesis
674
before_TSS
68
yes
 
13GO:0003700 transcription factor activity
719
before_TSS
66
yes
 
14GO:0006952 defense response
463
at_TSS,after_TSS
53
yes
 
15GO:0006955 immune response
379
at_TSS,after_TSS
45
yes
 
16GO:0009605 response to external stimulus
489
at_TSS
45
yes
 
17GO:0030154 cell differentiation
538
before_TSS
44
yes
 
18GO:0009607 response to biotic stimulus
483
at_TSS
40
yes
 
19GO:0007399 nervous system development
301
before_TSS
37
yes
 
20GO:0043207 response to external biotic stimulus
237
after_TSS
29
yes
 
21GO:0009613 response to pest, pathogen or parasite
221
after_TSS
27
yes
 
22GO:0007600 sensory perception
196
at_TSS,before_TSS
22
yes
MIT_155,
23GO:0007610 behavior
229
before_TSS
22
yes
 
24GO:0006366 transcription from RNA polymerase II promoter
231
before_TSS
21
yes
 
25GO:0030246 carbohydrate binding
208
at_TSS
19
yes
 
26GO:0005179 hormone activity
97
at_TSS,after_TSS
17
yes
 
27GO:0048468 cell development
162
before_TSS
17
yes
TF_PAX4,
28GO:0009790 embryonic development
170
before_TSS
17
yes
 
29GO:0030182 neuron differentiation
137
before_TSS
16
yes
 
30GO:0007389 pattern specification
128
at_TSS,before_TSS
14
yes
 
31GO:0007417 central nervous system development
76
before_TSS
14
yes
 
32GO:0004497 monooxygenase activity
90
at_TSS,after_TSS
14
yes
 
33GO:0005529 sugar binding
144
before_TSS
13
 
MIT_029,
34GO:0001501 skeletal development
87
before_TSS
13
yes
 
35GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
93
before_TSS
12
 
TF_HFH,
36GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
91
at_TSS
12
yes
 
37GO:0007420 brain development
63
before_TSS
12
yes
 
38GO:0008135 translation factor activity, nucleic acid binding
86
before_TSS
11
 
TF_CLOX,
39GO:0046849 bone remodeling
53
before_TSS
11
yes
 
40GO:0031497 chromatin assembly
95
at_TSS
11
yes
 
41GO:0045165 cell fate commitment
48
before_TSS
11
yes
 
42GO:0006334 nucleosome assembly
86
at_TSS
11
yes
 
43GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
85
before_TSS
11
 
TF_HFH,
44GO:0004519 endonuclease activity
70
before_TSS
11
 
TF_TST,
45GO:0045595 regulation of cell differentiation
75
before_TSS
11
yes
 
46GO:0045182 translation regulator activity
90
before_TSS
11
 
TF_CLOX,
47GO:0007608 perception of smell
37
before_TSS
10
 
MIT_155,
48GO:0001503 ossification
48
before_TSS
10
yes
 
49GO:0015290 electrochemical potential-driven transporter activity
171
at_TSS
10
yes
 
50GO:0007409 axonogenesis
81
before_TSS
10
yes
 
51GO:0007606 sensory perception of chemical stimulus
40
before_TSS
10
 
MIT_155,
52GO:0031214 biomineral formation
48
before_TSS
10
yes
 
53GO:0015291 porter activity
170
at_TSS
10
yes
 
54GO:0008284 positive regulation of cell proliferation
57
before_TSS
10
yes
 
55GO:0000003 reproduction
171
after_TSS
10
yes
 

Pairs of TF_S8 binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1MIT_155
before_TSS
3
GO:0007600 sensory perception
20
196
2TF_CLOX
before_TSS
2
GO:0045182 translation regulator activity
11
90
3TF_HFH
before_TSS
2
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
12
93
4MIT_029
before_TSS
1
GO:0005529 sugar binding
13
144
5TF_PAX4
before_TSS
1
GO:0048468 cell development
12
162
6TF_TST
before_TSS
1
GO:0004519 endonuclease activity
11
70

Details on Gene Ontology terms for targets of TF_S8

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
yes
before_TSS
121
1541
7.8
5.2
1.5
4.948
0
0
GO:0019222 regulation of metabolism
2none
 
yes
before_TSS
119
1510
7.8
5.2
1.5
4.945
0
0
GO:0031323 regulation of cellular metabolism
3none
 
yes
before_TSS
112
1420
7.8
5.2
1.5
4.786
0
0
GO:0019219 regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
4none
 
yes
before_TSS
112
1410
7.9
5.2
1.51
4.868
0
0
GO:0045449 regulation of transcription
5none
 
yes
before_TSS
111
1383
8
5.2
1.53
4.962
0
0
GO:0006351 transcription, DNA-dependent
6none
 
yes
before_TSS
109
1362
8
5.2
1.53
4.878
0
0
GO:0006355 regulation of transcription, DNA-dependent
7none
 
yes
before_TSS
84
941
8.9
5.2
1.7
5.303
0
0
GO:0030528 transcription regulator activity
8none
 
 
at_TSS
80
1020
7.8
5
1.56
4.323
0
0.0005
GO:0050896 response to stimulus
9none
 
yes
before_TSS
78
852
9.1
5.2
1.75
5.336
0
0
GO:0048513 organ development
10none
 
yes
before_TSS
76
811
9.3
5.2
1.79
5.483
0
0
GO:0009653 morphogenesis
11none
 
 
at_TSS
71
881
8
5
1.6
4.298
0
0.0007
GO:0050874 organismal physiological process
12none
 
yes
before_TSS
68
674
10
5.2
1.92
5.83
0
0
GO:0009887 organ morphogenesis
13none
 
yes
before_TSS
66
719
9.1
5.2
1.75
4.904
0
0
GO:0003700 transcription factor activity
14none
 
 
after_TSS
53
463
11.4
7.6
1.5
3.175
0.0014
0.0101
GO:0006952 defense response
15none
 
 
after_TSS
45
379
11.8
7.6
1.56
3.18
0.0014
0.0179
GO:0006955 immune response
16none
 
 
at_TSS
45
489
9.2
5
1.83
4.33
0
0.0003
GO:0009605 response to external stimulus
17none
 
 
after_TSS
45
356
12.6
7.6
1.66
3.633
0.0002
0.0037
GO:0005576
18none
 
yes
before_TSS
44
538
8.1
5.2
1.56
3.142
0.0016
0.0161
GO:0030154 cell differentiation
19none
 
 
at_TSS
40
483
8.2
5
1.65
3.356
0.0007
0.0076
GO:0009607 response to biotic stimulus
20none
 
 
at_TSS
39
463
8.4
5
1.67
3.425
0.0006
0.0059
GO:0006952 defense response
21none
 
yes
before_TSS
37
301
12.2
5.2
2.35
5.572
0
0
GO:0007399 nervous system development
22none
 
yes
before_TSS
35
302
11.5
5.2
2.21
5.026
0
0
GO:0005667
23none
 
 
at_TSS
32
356
8.9
5
1.79
3.486
0.0004
0.0074
GO:0005576
24none
 
 
at_TSS
31
379
8.1
5
1.63
2.867
0.0041
0.0329
GO:0006955 immune response
25none
 
 
after_TSS
29
237
12.2
7.6
1.6
2.712
0.0066
0.0461
GO:0043207 response to external biotic stimulus
26none
 
 
after_TSS
27
221
12.2
7.6
1.6
2.607
0.0091
0.0682
GO:0009613 response to pest, pathogen or parasite
27none
 
 
at_TSS
22
196
11.2
5
2.23
4.015
0
0.0031
GO:0007600 sensory perception
28none
 
yes
before_TSS
22
229
9.6
5.2
1.83
3.003
0.0026
0.0391
GO:0007610 behavior
29none
 
yes
before_TSS
21
231
9
5.2
1.73
2.661
0.0077
0.0919
GO:0006366 transcription from RNA polymerase II promoter
30none
 
 
at_TSS
19
208
9.1
5
1.82
2.745
0.006
0.0885
GO:0030246 carbohydrate binding
31none
 
 
after_TSS
17
97
17.5
7.6
2.3
3.697
0.0002
0.0061
GO:0005179 hormone activity
32none
 
yes
before_TSS
17
170
10
5.2
1.91
2.813
0.0049
0.0598
GO:0009790 embryonic development
33none
 
yes
before_TSS
17
162
10.4
5.2
2
3.029
0.0024
0.0359
GO:0048468 cell development
34none
 
yes
before_TSS
16
137
11.6
5.2
2.23
3.409
0.0006
0.0125
GO:0030182 neuron differentiation
35none
 
yes
before_TSS
14
128
10.9
5.2
2.09
2.915
0.0035
0.0241
GO:0007389 pattern specification
36none
 
yes
before_TSS
14
76
18.4
5.2
3.52
5.181
0
0
GO:0007417 central nervous system development
37none
 
 
after_TSS
14
90
15.5
7.6
2.04
2.853
0.0043
0.0546
GO:0004497 monooxygenase activity
38none
 
yes
before_TSS
13
87
14.9
5.2
2.85
4.083
0
0.0054
GO:0001501 skeletal development
39none
 
yes
before_TSS
12
63
19
5.2
3.64
4.938
0
0
GO:0007420 brain development
40none
 
 
at_TSS
12
90
13.3
5
2.65
3.628
0.0002
0.008
GO:0004497 monooxygenase activity
41none
 
 
at_TSS
12
91
13.1
5
2.62
3.584
0.0003
0.0176
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
42none
 
yes
before_TSS
11
53
20.7
5.2
3.96
5.087
0
0.0001
GO:0046849 bone remodeling
43none
 
 
at_TSS
11
97
11.3
5
2.26
2.865
0.0041
0.0803
GO:0005179 hormone activity
44none
 
yes
before_TSS
11
48
22.9
5.2
4.38
5.514
0
0
GO:0045165 cell fate commitment
45none
 
 
at_TSS
11
95
11.5
5
2.3
2.942
0.0032
0.0442
GO:0031497 chromatin assembly
46none
 
yes
before_TSS
11
75
14.6
5.2
2.8
3.682
0.0002
0.0423
GO:0045595 regulation of cell differentiation
47none
 
 
at_TSS
11
86
12.7
5
2.55
3.315
0.0009
0.0167
GO:0006334 nucleosome assembly
48none
 
yes
at_TSS
10
170
5.8
2
2.91
3.612
0.0003
0.0556
GO:0015291 porter activity
49none
 
yes
at_TSS
10
181
5.5
2
2.74
3.383
0.0007
0.0524
GO:0005578
50none
 
yes
after_TSS
10
171
5.8
1.9
3.01
3.728
0.0001
0.0706
GO:0000003 reproduction
51none
 
yes
at_TSS
10
171
5.8
2
2.9
3.59
0.0003
0.0605
GO:0015290 electrochemical potential-driven transporter activity
52none
 
yes
before_TSS
10
57
17.5
5.2
3.35
4.185
0
0.0104
GO:0008284 positive regulation of cell proliferation
53none
 
yes
before_TSS
10
48
20.8
5.2
3.98
4.865
0
0.0004
GO:0031214 biomineral formation
54none
 
yes
before_TSS
10
48
20.8
5.2
3.98
4.865
0
0.0004
GO:0001503 ossification
55none
 
yes
at_TSS
10
128
7.8
2
3.87
4.69
0
0.0001
GO:0007389 pattern specification
56none
 
yes
before_TSS
10
81
12.3
5.2
2.36
2.886
0.0039
0.084
GO:0007409 axonogenesis
57MIT_029
 
 
before_TSS
13
144
9
3.1
2.82
4
0
0.076
GO:0005529 sugar binding
58MIT_155
 
 
before_TSS
20
196
10.2
3.3
3.04
5.382
0
0.0031
GO:0007600 sensory perception
59MIT_155
 
 
before_TSS
10
40
25
3.3
7.47
7.627
0
0
GO:0007606 sensory perception of chemical stimulus
60MIT_155
 
 
before_TSS
10
37
27
3.3
8.07
8.021
0
0
GO:0007608 perception of smell
61TF_CLOX
 
 
before_TSS
11
90
12.2
3.5
3.41
4.431
0
0.081
GO:0045182 translation regulator activity
62TF_CLOX
 
 
before_TSS
11
86
12.7
3.5
3.57
4.616
0
0.0422
GO:0008135 translation factor activity, nucleic acid binding
63TF_HFH
 
 
before_TSS
12
93
12.9
3.6
3.55
4.802
0
0.0678
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
64TF_HFH
 
 
before_TSS
11
85
12.9
3.6
3.56
4.608
0
0.0878
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
65TF_PAX4
 
 
before_TSS
12
162
7.4
1.9
3.75
5.003
0
0.0121
GO:0048468 cell development
66TF_TST
 
 
before_TSS
11
70
15.7
3.6
4.27
5.366
0
0.0034
GO:0004519 endonuclease activity