CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_SRY

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_SRY
TF_SRY alone
In pair
with
1GO:0003700 transcription factor activity
719
after_TSS
38
yes
 
2GO:0007186 G-protein coupled receptor protein signaling pathway
495
after_TSS
25
yes
 
3GO:0001501 skeletal development
87
after_TSS
21
yes
 
4GO:0045182 translation regulator activity
90
before_TSS
21
 
MIT_013LEF,
5GO:0008135 translation factor activity, nucleic acid binding
86
before_TSS
20
 
MIT_013LEF, MIT_093PITX,
6GO:0005179 hormone activity
97
after_TSS
20
yes
 
7GO:0007389 pattern specification
128
before_TSS
17
yes
 
8GO:0007156 homophilic cell adhesion
76
after_TSS
17
yes
 
9GO:0007167 enzyme linked receptor protein signaling pathway
157
before_TSS
16
yes
 
10GO:0007399 nervous system development
301
at_TSS
16
yes
 
11GO:0006333 chromatin assembly or disassembly
121
at_TSS
14
yes
 
12GO:0046849 bone remodeling
53
after_TSS
14
yes
 
13GO:0005529 sugar binding
144
before_TSS
14
 
TF_GATA,
14GO:0001503 ossification
48
after_TSS
13
yes
 
15GO:0006959 humoral immune response
58
after_TSS
13
yes
 
16GO:0031214 biomineral formation
48
after_TSS
13
yes
 
17GO:0031497 chromatin assembly
95
at_TSS
12
yes
 
18GO:0006334 nucleosome assembly
86
at_TSS
11
yes
 
19GO:0004197 cysteine-type endopeptidase activity
118
before_TSS
10
 
TF_NFAT,

Pairs of TF_SRY binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1MIT_013LEF
before_TSS
2
GO:0045182 translation regulator activity
21
90
2TF_NFAT
before_TSS
1
GO:0004197 cysteine-type endopeptidase activity
10
118
3MIT_093PITX
before_TSS
1
GO:0008135 translation factor activity, nucleic acid binding
12
86
4TF_GATA
before_TSS
1
GO:0005529 sugar binding
14
144

Details on Gene Ontology terms for targets of TF_SRY

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
yes
 
before_TSS
49
183
26.7
17.8
1.5
3.196
0.0013
0.0463
GO:0030529
2none
 
yes
after_TSS
38
719
5.2
2.4
2.15
5.059
0
0
GO:0003700 transcription factor activity
3none
yes
 
after_TSS
25
495
5
2.8
1.75
2.956
0.0031
0.0422
GO:0007186 G-protein coupled receptor protein signaling pathway
4none
 
yes
before_TSS
24
302
7.9
5.1
1.54
2.237
0.0252
0.0746
GO:0005667
5none
 
 
after_TSS
21
87
24.1
10.3
2.34
4.255
0
0.0076
GO:0001501 skeletal development
6none
 
 
after_TSS
20
97
20.6
10.3
1.99
3.351
0.0008
0.0122
GO:0005179 hormone activity
7none
 
 
after_TSS
17
76
22.3
10.3
2.16
3.467
0.0005
0.0481
GO:0007156 homophilic cell adhesion
8none
 
yes
before_TSS
17
128
13.2
5.1
2.58
4.194
0
0.0003
GO:0007389 pattern specification
9none
 
yes
before_TSS
16
157
10.1
5.1
1.98
2.885
0.0039
0.0753
GO:0007167 enzyme linked receptor protein signaling pathway
10none
 
yes
at_TSS
16
301
5.3
1.4
3.55
5.529
0
0
GO:0007399 nervous system development
11none
 
 
after_TSS
14
53
26.4
10.3
2.56
3.863
0.0001
0.0136
GO:0046849 bone remodeling
12none
 
 
at_TSS
14
121
11.5
4.7
2.43
3.543
0.0003
0.0072
GO:0006333 chromatin assembly or disassembly
13none
 
 
after_TSS
13
48
27
10.3
2.62
3.828
0.0001
0.0157
GO:0001503 ossification
14none
 
 
after_TSS
13
48
27
10.3
2.62
3.828
0.0001
0.0157
GO:0031214 biomineral formation
15none
 
 
after_TSS
13
58
22.4
10.3
2.17
3.037
0.0023
0.0672
GO:0006959 humoral immune response
16none
 
 
at_TSS
12
95
12.6
4.7
2.65
3.624
0.0002
0.0053
GO:0031497 chromatin assembly
17none
 
 
at_TSS
12
88
13.6
4.7
2.87
3.932
0
0.0025
GO:0005694
18none
 
 
at_TSS
11
86
12.7
4.7
2.69
3.517
0.0004
0.0084
GO:0006334 nucleosome assembly
19MIT_013LEF
 
 
before_TSS
21
90
23.3
8
2.89
5.339
0
0.004
GO:0045182 translation regulator activity
20MIT_013LEF
 
 
before_TSS
20
86
23.2
8
2.88
5.192
0
0.0044
GO:0008135 translation factor activity, nucleic acid binding
21MIT_093PITX
 
 
before_TSS
12
86
13.9
4.3
3.22
4.408
0
0.0644
GO:0008135 translation factor activity, nucleic acid binding
22TF_ATF1
 
 
before_TSS
11
88
12.5
4.3
2.87
3.757
0.0001
0.0594
GO:0005694
23TF_GATA
 
 
before_TSS
14
144
9.7
3.4
2.8
4.133
0
0.0499
GO:0005529 sugar binding
24TF_MZF
 
 
before_TSS
10
88
11.3
2.6
4.21
5.041
0
0.0002
GO:0005694
25TF_NFAT
 
 
before_TSS
10
118
8.4
2.1
3.91
4.732
0
0.048
GO:0004197 cysteine-type endopeptidase activity