CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_STAT

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_STAT
TF_STAT alone
In pair
with
1GO:0006082 organic acid metabolism
350
before_TSS
42
yes
 
2GO:0019752 carboxylic acid metabolism
350
before_TSS
42
yes
 
3GO:0006512 ubiquitin cycle
390
before_TSS
35
 
TF_GABP, TF_ELK, MIT_006SP1,
4GO:0003735 structural constituent of ribosome
172
before_TSS
29
 
many
5GO:0004842 ubiquitin-protein ligase activity
263
before_TSS
29
yes
 
6GO:0016567 protein ubiquitination
227
before_TSS
27
yes
 
7GO:0000398 nuclear mRNA splicing, via spliceosome
149
before_TSS
23
 
TF_AHR, TF_POLYA, TF_LYF,
8GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
149
before_TSS
23
 
TF_AHR, TF_POLYA, TF_LYF,
9GO:0000375 RNA splicing, via transesterification reactions
149
before_TSS
23
 
TF_AHR, TF_POLYA, TF_LYF,
10GO:0005125 cytokine activity
173
at_TSS,before_TSS
22
yes
MIT_055NFAT,
11GO:0043037 translation
128
at_TSS
22
yes
 
12GO:0004857 enzyme inhibitor activity
155
before_TSS
21
 
MIT_013LEF,
13GO:0008380 RNA splicing
154
before_TSS
19
 
TF_POLYA, TF_LYF,
14GO:0006325 establishment and/or maintenance of chromatin architecture
179
after_TSS
18
yes
TF_ATF1, TF_AHR,
15GO:0006323 DNA packaging
188
before_TSS,after_TSS
18
yes
TF_ATF1, TF_AHR, TF_NFAT,
16GO:0045182 translation regulator activity
90
at_TSS
18
yes
 
17GO:0008135 translation factor activity, nucleic acid binding
86
at_TSS
17
yes
 
18GO:0006333 chromatin assembly or disassembly
121
before_TSS,after_TSS
15
yes
TF_ATF1, TF_CART,
19GO:0006461 protein complex assembly
123
after_TSS
15
yes
many
20GO:0031497 chromatin assembly
95
before_TSS,after_TSS
14
yes
TF_ATF1, TF_RFX1, TF_CART,
21GO:0006334 nucleosome assembly
86
before_TSS,after_TSS
14
yes
TF_ATF1, TF_CART,
22GO:0007389 pattern specification
128
after_TSS
14
yes
 
23GO:0003743 translation initiation factor activity
53
at_TSS
13
yes
 
24GO:0005529 sugar binding
144
before_TSS
13
 
MIT_047NFY, TF_POU6F,
25GO:0008134 transcription factor binding
110
before_TSS
12
 
TF_SREBP,
26GO:0006913 nucleocytoplasmic transport
70
before_TSS
11
 
TF_HMX,
27GO:0005126 hematopoietin/interferon-class (D200-domain) cytokine receptor binding
22
after_TSS
10
yes
 

Pairs of TF_STAT binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1TF_ATF1
after_TSS
6
GO:0006334 nucleosome assembly
10
86
2TF_LYF
before_TSS
5
GO:0003735 structural constituent of ribosome
22
172
3TF_AHR
before_TSS,after_TSS
5
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
23
149
4TF_POLYA
before_TSS
4
GO:0008380 RNA splicing
14
154
5TF_CART
before_TSS
3
GO:0006333 chromatin assembly or disassembly
13
121
6TF_HMX
before_TSS
2
GO:0003735 structural constituent of ribosome
19
172
7TF_SREBP
before_TSS
1
GO:0008134 transcription factor binding
12
110
8TF_PAX4
after_TSS
1
GO:0006461 protein complex assembly
10
123
9TF_RFX1
before_TSS
1
GO:0031497 chromatin assembly
10
95
10TF_ATF6
after_TSS
1
GO:0006461 protein complex assembly
10
123
11MIT_047NFY
before_TSS
1
GO:0005529 sugar binding
10
144
12TF_POU6F
before_TSS
1
GO:0005529 sugar binding
13
144
13MIT_055NFAT
at_TSS
1
GO:0005125 cytokine activity
10
173
14TF_GABP
before_TSS
1
GO:0006512 ubiquitin cycle
24
390
15TF_ARNT
after_TSS
1
GO:0006461 protein complex assembly
11
123
16TF_NFAT
before_TSS
1
GO:0006323 DNA packaging
10
188
17TF_FOXD
before_TSS
1
GO:0003735 structural constituent of ribosome
15
172
18MIT_013LEF
before_TSS
1
GO:0004857 enzyme inhibitor activity
21
155
19MIT_006SP1
before_TSS
1
GO:0006512 ubiquitin cycle
23
390
20TF_HTF
after_TSS
1
GO:0006461 protein complex assembly
10
123
21TF_ELK
before_TSS
1
GO:0006512 ubiquitin cycle
35
390
22MIT_093PITX
before_TSS
1
GO:0003735 structural constituent of ribosome
29
172
23TF_CREB
after_TSS
1
GO:0006461 protein complex assembly
11
123

Details on Gene Ontology terms for targets of TF_STAT

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
yes
 
before_TSS
42
350
12
6.9
1.72
3.779
0.0001
0.0288
GO:0019752 carboxylic acid metabolism
2none
yes
 
before_TSS
42
350
12
6.9
1.72
3.779
0.0001
0.0288
GO:0006082 organic acid metabolism
3none
 
yes
before_TSS
29
263
11
5.9
1.86
3.559
0.0003
0.0454
GO:0004842 ubiquitin-protein ligase activity
4none
 
yes
before_TSS
27
227
11.8
5.9
2.01
3.861
0.0001
0.0206
GO:0016567 protein ubiquitination
5none
 
 
after_TSS
26
88
29.5
17.3
1.69
3.021
0.0025
0.0354
GO:0005694
6none
 
yes
before_TSS
26
231
11.2
5.9
1.9
3.48
0.0005
0.0917
GO:0000151
7none
 
yes
after_TSS
24
302
7.9
5
1.57
2.338
0.0193
0.0958
GO:0005667
8none
 
yes
before_TSS
22
173
12.7
5.9
2.15
3.825
0.0001
0.0239
GO:0005125 cytokine activity
9none
 
 
at_TSS
22
128
17.1
9.3
1.84
3.086
0.002
0.053
GO:0043037 translation
10none
 
 
at_TSS
18
90
20
9.3
2.14
3.506
0.0004
0.0075
GO:0045182 translation regulator activity
11none
 
yes
after_TSS
18
179
10
5
1.99
3.09
0.002
0.0457
GO:0006325 establishment and/or maintenance of chromatin architecture
12none
 
yes
after_TSS
18
188
9.5
5
1.89
2.864
0.0041
0.085
GO:0006323 DNA packaging
13none
 
 
at_TSS
17
86
19.7
9.3
2.12
3.352
0.0008
0.0146
GO:0008135 translation factor activity, nucleic acid binding
14none
 
yes
after_TSS
15
78
19.2
5
3.81
5.747
0
0
GO:0000786
15none
 
yes
after_TSS
15
121
12.3
5
2.45
3.717
0.0002
0.0056
GO:0006333 chromatin assembly or disassembly
16none
 
yes
after_TSS
15
123
12.1
5
2.41
3.645
0.0002
0.0088
GO:0006461 protein complex assembly
17none
 
yes
after_TSS
14
86
16.2
5
3.22
4.78
0
0
GO:0006334 nucleosome assembly
18none
 
yes
after_TSS
14
95
14.7
5
2.92
4.337
0
0.0005
GO:0031497 chromatin assembly
19none
 
yes
after_TSS
14
128
10.9
5
2.17
3.065
0.0021
0.0215
GO:0007389 pattern specification
20none
 
 
at_TSS
13
53
24.5
9.3
2.63
3.823
0.0001
0.0068
GO:0003743 translation initiation factor activity
21none
 
yes
before_TSS
12
88
13.6
5.9
2.3
3.086
0.002
0.0436
GO:0005694
22none
 
 
after_TSS
10
22
45.4
17.3
2.61
3.477
0.0005
0.0618
GO:0005126 hematopoietin/interferon-class (D200-domain) cytokine receptor binding
23MIT_006SP1
 
 
before_TSS
23
390
5.8
2.5
2.32
4.29
0
0.0701
GO:0006512 ubiquitin cycle
24MIT_013LEF
 
 
before_TSS
21
155
13.5
5.2
2.59
4.689
0
0.0395
GO:0004857 enzyme inhibitor activity
25MIT_047NFY
 
 
before_TSS
10
144
6.9
2
3.45
4.248
0
0.0345
GO:0005529 sugar binding
26MIT_055NFAT
 
 
at_TSS
10
173
5.7
0.8
7.13
7.347
0
0
GO:0005125 cytokine activity
27MIT_093PITX
 
 
before_TSS
29
172
16.8
6.4
2.61
5.61
0
0.0008
GO:0003735 structural constituent of ribosome
28MIT_093PITX
 
 
before_TSS
25
136
18.3
6.4
2.85
5.708
0
0.0004
GO:0005840
29TF_AHR
 
 
before_TSS
23
149
15.4
6.8
2.24
4.162
0
0.0852
GO:0000375 RNA splicing, via transesterification reactions
30TF_AHR
 
 
before_TSS
23
149
15.4
6.8
2.24
4.162
0
0.0852
GO:0000398 nuclear mRNA splicing, via spliceosome
31TF_AHR
 
 
before_TSS
23
149
15.4
6.8
2.24
4.162
0
0.0852
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
32TF_AHR
 
 
after_TSS
12
88
13.6
3.1
4.37
5.702
0
0
GO:0005694
33TF_AHR
 
yes
after_TSS
10
179
5.5
0.6
8.45
8.193
0
0
GO:0006325 establishment and/or maintenance of chromatin architecture
34TF_AHR
 
yes
after_TSS
10
188
5.3
0.6
8.04
7.943
0
0
GO:0006323 DNA packaging
35TF_ARNT
 
 
after_TSS
11
123
8.9
2.7
3.2
4.16
0
0.0176
GO:0006461 protein complex assembly
36TF_ARNT
 
 
after_TSS
11
88
12.5
2.7
4.47
5.546
0
0
GO:0005694
37TF_ATF1
 
 
after_TSS
11
88
12.5
2.7
4.59
5.663
0
0
GO:0005694
38TF_ATF1
 
yes
after_TSS
10
123
8.1
0.5
15.37
11.682
0
0
GO:0006461 protein complex assembly
39TF_ATF1
 
yes
after_TSS
10
179
5.5
0.5
10.56
9.399
0
0
GO:0006325 establishment and/or maintenance of chromatin architecture
40TF_ATF1
 
yes
after_TSS
10
188
5.3
0.5
10.05
9.127
0
0
GO:0006323 DNA packaging
41TF_ATF1
 
 
after_TSS
10
86
11.6
2.7
4.27
5.098
0
0.0002
GO:0006334 nucleosome assembly
42TF_ATF1
 
yes
after_TSS
10
95
10.5
0.5
19.9
13.488
0
0
GO:0031497 chromatin assembly
43TF_ATF1
 
 
after_TSS
10
78
12.8
2.7
4.71
5.504
0
0
GO:0000786
44TF_ATF1
 
 
after_TSS
10
121
8.2
2.7
3.04
3.77
0.0001
0.081
GO:0006333 chromatin assembly or disassembly
45TF_ATF6
 
 
after_TSS
10
123
8.1
2.4
3.33
4.114
0
0.021
GO:0006461 protein complex assembly
46TF_CART
 
 
before_TSS
13
121
10.7
3.2
3.28
4.643
0
0.0014
GO:0006333 chromatin assembly or disassembly
47TF_CART
 
 
before_TSS
10
95
10.5
3.2
3.21
3.99
0
0.0217
GO:0031497 chromatin assembly
48TF_CART
 
 
before_TSS
10
86
11.6
3.2
3.55
4.371
0
0.0042
GO:0006334 nucleosome assembly
49TF_CREB
 
 
after_TSS
11
123
8.9
2.5
3.49
4.502
0
0.0039
GO:0006461 protein complex assembly
50TF_CREB
 
 
after_TSS
10
88
11.3
2.5
4.43
5.245
0
0.0001
GO:0005694
51TF_ELK
 
 
before_TSS
35
390
8.9
4.4
2
4.363
0
0.0792
GO:0006512 ubiquitin cycle
52TF_FOXD
yes
 
before_TSS
15
172
8.7
2.5
3.4
5.149
0
0.0056
GO:0003735 structural constituent of ribosome
53TF_GABP
 
 
before_TSS
24
390
6.1
2.8
2.19
4.063
0
0.0951
GO:0006512 ubiquitin cycle
54TF_HMX
 
 
before_TSS
19
172
11
4.2
2.58
4.425
0
0.0833
GO:0003735 structural constituent of ribosome
55TF_HMX
 
 
before_TSS
11
70
15.7
4.2
3.67
4.747
0
0.0892
GO:0006913 nucleocytoplasmic transport
56TF_HTF
 
 
after_TSS
10
123
8.1
2.4
3.31
4.089
0
0.0231
GO:0006461 protein complex assembly
57TF_HTF
 
 
after_TSS
10
88
11.3
2.4
4.63
5.421
0
0
GO:0005694
58TF_LYF
 
 
before_TSS
22
172
12.7
4.7
2.69
4.992
0
0.0086
GO:0003735 structural constituent of ribosome
59TF_LYF
 
 
before_TSS
20
136
14.7
4.7
3.09
5.488
0
0.0008
GO:0005840
60TF_LYF
 
 
before_TSS
19
149
12.7
4.7
2.68
4.619
0
0.0166
GO:0000398 nuclear mRNA splicing, via spliceosome
61TF_LYF
 
 
before_TSS
19
149
12.7
4.7
2.68
4.619
0
0.0166
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
62TF_LYF
 
 
before_TSS
19
149
12.7
4.7
2.68
4.619
0
0.0166
GO:0000375 RNA splicing, via transesterification reactions
63TF_LYF
 
 
before_TSS
19
154
12.3
4.7
2.59
4.454
0
0.0331
GO:0008380 RNA splicing
64TF_NFAT
 
 
before_TSS
10
188
5.3
1.5
3.47
4.269
0
0.0096
GO:0006323 DNA packaging
65TF_PAX4
 
 
after_TSS
10
123
8.1
1.2
6.6
6.973
0
0
GO:0006461 protein complex assembly
66TF_POLYA
 
 
before_TSS
14
154
9
3
3.02
4.448
0
0.0312
GO:0008380 RNA splicing
67TF_POLYA
 
 
before_TSS
13
149
8.7
3
2.9
4.111
0
0.0945
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
68TF_POLYA
 
 
before_TSS
13
149
8.7
3
2.9
4.111
0
0.0945
GO:0000375 RNA splicing, via transesterification reactions
69TF_POLYA
 
 
before_TSS
13
149
8.7
3
2.9
4.111
0
0.0945
GO:0000398 nuclear mRNA splicing, via spliceosome
70TF_POU6F
 
 
before_TSS
13
144
9
2.2
3.93
5.423
0
0.0006
GO:0005529 sugar binding
71TF_RFX1
 
 
before_TSS
10
95
10.5
2.9
3.53
4.349
0
0.005
GO:0031497 chromatin assembly
72TF_SREBP
 
 
before_TSS
12
110
10.9
3.3
3.3
4.481
0
0.0642
GO:0008134 transcription factor binding