CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_TATA

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_TATA
TF_TATA alone
In pair
with
1GO:0007275 development
1378
before_TSS
69
yes
 
2GO:0050896 response to stimulus
1020
at_TSS
68
yes
 
3GO:0050874 organismal physiological process
881
at_TSS
64
yes
 
4GO:0048513 organ development
852
at_TSS,before_TSS
52
yes
 
5GO:0030528 transcription regulator activity
941
before_TSS
49
yes
 
6GO:0009653 morphogenesis
811
at_TSS,before_TSS
49
yes
 
7GO:0005102 receptor binding
406
at_TSS
47
yes
 
8GO:0009607 response to biotic stimulus
483
at_TSS,after_TSS
47
yes
 
9GO:0006952 defense response
463
at_TSS,after_TSS
46
yes
 
10GO:0009605 response to external stimulus
489
at_TSS,after_TSS
46
yes
 
11GO:0016491 oxidoreductase activity
573
after_TSS
41
yes
 
12GO:0009887 organ morphogenesis
674
at_TSS,before_TSS
41
yes
 
13GO:0003700 transcription factor activity
719
before_TSS
40
yes
 
14GO:0006955 immune response
379
at_TSS
36
yes
 
15GO:0006950 response to stress
546
at_TSS
36
yes
 
16GO:0005198 structural molecule activity
500
at_TSS
35
yes
 
17GO:0043207 response to external biotic stimulus
237
at_TSS,after_TSS
30
yes
 
18GO:0009613 response to pest, pathogen or parasite
221
at_TSS,after_TSS
26
yes
 
19GO:0005125 cytokine activity
173
at_TSS
24
yes
 
20GO:0048519 negative regulation of biological process
408
before_TSS
23
yes
 
21GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
208
at_TSS
20
yes
TF_NFY,
22GO:0051276 chromosome organization and biogenesis
220
at_TSS
20
yes
TF_NFY,
23GO:0004857 enzyme inhibitor activity
155
after_TSS
19
yes
 
24GO:0006325 establishment and/or maintenance of chromatin architecture
179
at_TSS
19
yes
MIT_005NFY, TF_NFY,
25GO:0006461 protein complex assembly
123
at_TSS
19
yes
MIT_005NFY, TF_NFY,
26GO:0006323 DNA packaging
188
at_TSS
19
yes
MIT_005NFY, TF_NFY,
27GO:0009611 response to wounding
180
at_TSS
19
yes
 
28GO:0048523 negative regulation of cellular process
375
before_TSS
19
yes
 
29GO:0043118 negative regulation of physiological process
342
before_TSS
18
yes
 
30GO:0006333 chromatin assembly or disassembly
121
at_TSS
18
yes
MIT_005NFY, TF_NFY,
31GO:0031497 chromatin assembly
95
at_TSS
18
yes
MIT_005NFY, TF_NFY,
32GO:0006334 nucleosome assembly
86
at_TSS
18
yes
MIT_005NFY, TF_NFY,
33GO:0005179 hormone activity
97
at_TSS,after_TSS
17
yes
 
34GO:0007600 sensory perception
196
at_TSS
17
yes
 
35GO:0007399 nervous system development
301
before_TSS
17
yes
 
36GO:0006954 inflammatory response
101
at_TSS
16
yes
 
37GO:0015077 monovalent inorganic cation transporter activity
138
before_TSS
14
 
TF_AML,
38GO:0004984 olfactory receptor activity
28
before_TSS
14
yes
 
39GO:0015078 hydrogen ion transporter activity
133
before_TSS
14
 
TF_AML,
40GO:0004866 endopeptidase inhibitor activity
112
after_TSS
14
yes
 
41GO:0030414 protease inhibitor activity
112
after_TSS
14
yes
 
42GO:0006935 chemotaxis
79
at_TSS
12
yes
 
43GO:0042330 taxis
79
at_TSS
12
yes
 
44GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
91
at_TSS,before_TSS
12
yes
MIT_051TATA,
45GO:0005529 sugar binding
144
before_TSS
12
 
TF_POU6F,
46GO:0004497 monooxygenase activity
90
at_TSS,before_TSS,after_TSS
12
yes
MIT_051TATA,
47GO:0000003 reproduction
171
before_TSS
12
 
TF_ARP1,
48GO:0019953 sexual reproduction
145
before_TSS
11
 
TF_ARP1,
49GO:0009790 embryonic development
170
before_TSS
11
yes
 
50GO:0005342 organic acid transporter activity
68
after_TSS
10
yes
 
51GO:0007389 pattern specification
128
at_TSS
10
yes
 
52GO:0001501 skeletal development
87
before_TSS
10
yes
 
53GO:0007276 gametogenesis
119
before_TSS
10
 
TF_ARP1,
54GO:0046943 carboxylic acid transporter activity
68
after_TSS
10
yes
 
55GO:0009888 histogenesis
112
before_TSS
10
yes
 

Pairs of TF_TATA binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1TF_NFY
at_TSS
8
GO:0051276 chromosome organization and biogenesis
14
220
2MIT_005NFY
at_TSS
6
GO:0006461 protein complex assembly
11
123
3TF_ARP1
before_TSS
3
GO:0000003 reproduction
12
171
4MIT_051TATA
before_TSS
2
GO:0004497 monooxygenase activity
11
90
5TF_AML
before_TSS
2
GO:0015077 monovalent inorganic cation transporter activity
14
138
6TF_POU6F
before_TSS
1
GO:0005529 sugar binding
12
144

Details on Gene Ontology terms for targets of TF_TATA

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
 
at_TSS
109
1749
6.2
3.7
1.64
5.774
0
0
GO:0005615
2none
 
yes
before_TSS
69
1378
5
2.8
1.73
5.004
0
0
GO:0007275 development
3none
 
 
at_TSS
68
1020
6.6
3.7
1.75
5.021
0
0
GO:0050896 response to stimulus
4none
 
 
at_TSS
64
881
7.2
3.7
1.91
5.602
0
0
GO:0050874 organismal physiological process
5none
 
 
at_TSS
52
852
6.1
3.7
1.6
3.662
0.0002
0.0305
GO:0048513 organ development
6none
 
yes
before_TSS
50
852
5.8
2.8
2.03
5.399
0
0
GO:0048513 organ development
7none
 
 
at_TSS
49
811
6
3.7
1.59
3.471
0.0005
0.0271
GO:0009653 morphogenesis
8none
 
yes
before_TSS
49
941
5.2
2.8
1.8
4.435
0
0
GO:0030528 transcription regulator activity
9none
 
 
at_TSS
48
356
13.4
3.7
3.55
9.715
0
0
GO:0005576
10none
 
 
at_TSS
47
483
9.7
3.7
2.56
6.972
0
0
GO:0009607 response to biotic stimulus
11none
 
 
at_TSS
47
406
11.5
3.7
3.05
8.351
0
0
GO:0005102 receptor binding
12none
 
 
at_TSS
46
463
9.9
3.7
2.61
7.055
0
0
GO:0006952 defense response
13none
 
 
at_TSS
46
489
9.4
3.7
2.48
6.634
0
0
GO:0009605 response to external stimulus
14none
 
yes
before_TSS
45
811
5.5
2.8
1.92
4.695
0
0
GO:0009653 morphogenesis
15none
 
 
after_TSS
42
483
8.6
4.7
1.84
4.207
0
0.0005
GO:0009607 response to biotic stimulus
16none
 
 
after_TSS
41
573
7.1
4.7
1.51
2.819
0.0048
0.0801
GO:0016491 oxidoreductase activity
17none
 
 
after_TSS
41
463
8.8
4.7
1.87
4.281
0
0.0004
GO:0006952 defense response
18none
 
 
at_TSS
41
674
6
3.7
1.6
3.203
0.0013
0.0622
GO:0009887 organ morphogenesis
19none
 
yes
before_TSS
40
719
5.5
2.8
1.92
4.427
0
0
GO:0003700 transcription factor activity
20none
 
 
after_TSS
40
489
8.1
4.7
1.73
3.686
0.0002
0.0023
GO:0009605 response to external stimulus
21none
 
yes
before_TSS
40
674
5.9
2.8
2.05
4.87
0
0
GO:0009887 organ morphogenesis
22none
 
 
at_TSS
36
379
9.4
3.7
2.5
5.908
0
0
GO:0006955 immune response
23none
 
 
at_TSS
36
546
6.5
3.7
1.73
3.506
0.0004
0.0184
GO:0006950 response to stress
24none
 
 
at_TSS
35
500
7
3.7
1.84
3.834
0.0001
0.0153
GO:0005198 structural molecule activity
25none
 
 
after_TSS
35
356
9.8
4.7
2.08
4.618
0
0.0001
GO:0005576
26none
 
 
at_TSS
30
237
12.6
3.7
3.33
7.216
0
0
GO:0043207 response to external biotic stimulus
27none
 
 
at_TSS
26
221
11.7
3.7
3.1
6.261
0
0
GO:0009613 response to pest, pathogen or parasite
28none
 
 
after_TSS
24
237
10.1
4.7
2.14
3.966
0
0.0022
GO:0043207 response to external biotic stimulus
29none
 
 
at_TSS
24
173
13.8
3.7
3.65
6.991
0
0
GO:0005125 cytokine activity
30none
 
yes
before_TSS
23
408
5.6
2.8
1.95
3.381
0.0007
0.0155
GO:0048519 negative regulation of biological process
31none
 
 
after_TSS
22
221
9.9
4.7
2.11
3.705
0.0002
0.0064
GO:0009613 response to pest, pathogen or parasite
32none
 
 
at_TSS
20
208
9.6
3.7
2.53
4.434
0
0.0003
GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
33none
 
 
at_TSS
20
220
9
3.7
2.39
4.152
0
0.0008
GO:0051276 chromosome organization and biogenesis
34none
 
 
at_TSS
19
179
10.6
3.7
2.79
4.813
0
0
GO:0006325 establishment and/or maintenance of chromatin architecture
35none
 
 
at_TSS
19
123
15.4
3.7
4.07
6.801
0
0
GO:0006461 protein complex assembly
36none
 
 
at_TSS
19
180
10.5
3.7
2.78
4.785
0
0.0001
GO:0009611 response to wounding
37none
 
 
after_TSS
19
155
12.2
4.7
2.59
4.456
0
0.0015
GO:0004857 enzyme inhibitor activity
38none
 
yes
before_TSS
19
375
5
2.8
1.75
2.566
0.0102
0.0896
GO:0048523 negative regulation of cellular process
39none
 
 
at_TSS
19
188
10.1
3.7
2.66
4.567
0
0.0001
GO:0006323 DNA packaging
40none
 
 
at_TSS
18
95
18.9
3.7
4.99
7.763
0
0
GO:0031497 chromatin assembly
41none
 
 
at_TSS
18
86
20.9
3.7
5.51
8.349
0
0
GO:0006334 nucleosome assembly
42none
 
 
at_TSS
18
121
14.8
3.7
3.92
6.414
0
0
GO:0006333 chromatin assembly or disassembly
43none
 
yes
before_TSS
18
342
5.2
2.8
1.82
2.667
0.0076
0.08
GO:0043118 negative regulation of physiological process
44none
 
 
at_TSS
18
78
23
3.7
6.08
8.944
0
0
GO:0000786
45none
 
yes
before_TSS
17
301
5.6
2.8
1.95
2.902
0.0037
0.0218
GO:0007399 nervous system development
46none
 
 
at_TSS
17
97
17.5
3.7
4.62
7.109
0
0
GO:0005179 hormone activity
47none
 
yes
before_TSS
17
302
5.6
2.8
1.95
2.887
0.0038
0.0154
GO:0005667
48none
 
 
at_TSS
17
196
8.6
3.7
2.28
3.606
0.0003
0.0126
GO:0007600 sensory perception
49none
 
 
at_TSS
16
88
18.1
3.7
4.79
7.092
0
0
GO:0005694
50none
 
 
at_TSS
16
101
15.8
3.7
4.17
6.365
0
0
GO:0006954 inflammatory response
51none
 
 
after_TSS
14
112
12.5
4.7
2.64
3.902
0
0.0058
GO:0004866 endopeptidase inhibitor activity
52none
 
 
after_TSS
14
112
12.5
4.7
2.64
3.902
0
0.0058
GO:0030414 protease inhibitor activity
53none
 
 
after_TSS
14
97
14.4
4.7
3.05
4.53
0
0.0004
GO:0005179 hormone activity
54none
 
 
before_TSS
14
28
50
20.6
2.42
3.847
0.0001
0.0437
GO:0004984 olfactory receptor activity
55none
 
 
at_TSS
12
79
15.1
3.7
4
5.32
0
0
GO:0042330 taxis
56none
 
 
at_TSS
12
91
13.1
3.7
3.47
4.709
0
0.0004
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
57none
 
 
after_TSS
12
90
13.3
4.7
2.82
3.869
0.0001
0.0033
GO:0004497 monooxygenase activity
58none
 
 
at_TSS
12
79
15.1
3.7
4
5.32
0
0
GO:0006935 chemotaxis
59none
 
 
at_TSS
11
90
12.2
3.7
3.22
4.202
0
0.0016
GO:0004497 monooxygenase activity
60none
 
 
at_TSS
11
97
11.3
3.7
2.99
3.907
0
0.0171
GO:0005792
61none
 
yes
before_TSS
11
170
6.4
2.8
2.24
2.814
0.0048
0.0617
GO:0009790 embryonic development
62none
 
 
after_TSS
10
68
14.7
4.7
3.11
3.895
0
0.0179
GO:0046943 carboxylic acid transporter activity
63none
 
yes
before_TSS
10
112
8.9
2.8
3.09
3.84
0.0001
0.015
GO:0009888 histogenesis
64none
 
 
after_TSS
10
68
14.7
4.7
3.11
3.895
0
0.0179
GO:0005342 organic acid transporter activity
65none
 
yes
at_TSS
10
128
7.8
1.6
4.68
5.454
0
0
GO:0007389 pattern specification
66none
 
yes
before_TSS
10
87
11.4
2.8
3.98
4.816
0
0.0005
GO:0001501 skeletal development
67MIT_005NFY
 
 
at_TSS
11
123
8.9
0.3
25.17
16.088
0
0
GO:0006461 protein complex assembly
68MIT_005NFY
 
 
at_TSS
10
188
5.3
0.3
14.97
11.528
0
0
GO:0006323 DNA packaging
69MIT_005NFY
 
 
at_TSS
10
78
12.8
0.3
36.08
18.561
0
0
GO:0000786
70MIT_005NFY
 
 
at_TSS
10
121
8.2
0.3
23.26
14.695
0
0
GO:0006333 chromatin assembly or disassembly
71MIT_005NFY
 
 
at_TSS
10
86
11.6
0.3
32.72
17.631
0
0
GO:0006334 nucleosome assembly
72MIT_005NFY
 
 
at_TSS
10
179
5.5
0.3
15.72
11.85
0
0
GO:0006325 establishment and/or maintenance of chromatin architecture
73MIT_005NFY
 
 
at_TSS
10
95
10.5
0.3
29.62
16.726
0
0
GO:0031497 chromatin assembly
74MIT_051TATA
 
 
before_TSS
11
90
12.2
3
4.01
5.091
0
0.0038
GO:0004497 monooxygenase activity
75MIT_051TATA
 
 
before_TSS
10
91
10.9
3
3.61
4.432
0
0.0504
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
76TF_AML
 
 
before_TSS
14
138
10.1
2.8
3.53
5.152
0
0.0111
GO:0015077 monovalent inorganic cation transporter activity
77TF_AML
 
 
before_TSS
14
133
10.5
2.8
3.67
5.322
0
0.0044
GO:0015078 hydrogen ion transporter activity
78TF_ARP1
 
 
before_TSS
12
171
7
1.8
3.77
5.029
0
0.0213
GO:0000003 reproduction
79TF_ARP1
 
 
before_TSS
11
145
7.5
1.8
4.08
5.136
0
0.0121
GO:0019953 sexual reproduction
80TF_ARP1
 
 
before_TSS
10
119
8.4
1.8
4.52
5.311
0
0.0047
GO:0007276 gametogenesis
81TF_NFY
 
 
at_TSS
14
188
7.4
0.6
11.7
11.836
0
0
GO:0006323 DNA packaging
82TF_NFY
 
 
at_TSS
14
208
6.7
0.6
10.57
11.15
0
0
GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
83TF_NFY
 
 
at_TSS
14
123
11.3
0.6
17.89
15.065
0
0
GO:0006461 protein complex assembly
84TF_NFY
 
 
at_TSS
14
179
7.8
0.6
12.29
12.18
0
0
GO:0006325 establishment and/or maintenance of chromatin architecture
85TF_NFY
 
 
at_TSS
14
220
6.3
0.6
10
10.782
0
0
GO:0051276 chromosome organization and biogenesis
86TF_NFY
 
 
at_TSS
13
95
13.6
0.6
21.5
16.057
0
0
GO:0031497 chromatin assembly
87TF_NFY
 
 
at_TSS
13
78
16.6
0.6
26.19
17.863
0
0
GO:0000786
88TF_NFY
 
 
at_TSS
13
121
10.7
0.6
16.88
14.053
0
0
GO:0006333 chromatin assembly or disassembly
89TF_NFY
 
 
at_TSS
13
86
15.1
0.6
23.76
16.948
0
0
GO:0006334 nucleosome assembly
90TF_NFY
 
 
at_TSS
11
88
12.5
0.6
19.64
14.048
0
0
GO:0005694
91TF_POU6F
 
 
before_TSS
12
144
8.3
2.7
3.05
4.155
0
0.0468
GO:0005529 sugar binding