CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_TST

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_TST
TF_TST alone
In pair
with
1GO:0030528 transcription regulator activity
941
before_TSS
71
yes
 
2GO:0003700 transcription factor activity
719
before_TSS
55
yes
 
3GO:0006259 DNA metabolism
427
at_TSS
36
yes
 
4GO:0043207 response to external biotic stimulus
237
after_TSS
34
yes
 
5GO:0009613 response to pest, pathogen or parasite
221
after_TSS
33
yes
 
6GO:0004497 monooxygenase activity
90
after_TSS
23
yes
 
7GO:0003735 structural constituent of ribosome
172
before_TSS
22
yes
 
8GO:0005179 hormone activity
97
before_TSS,after_TSS
19
yes
TF_E4BP4,
9GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
91
after_TSS
19
yes
 
10GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
208
at_TSS
18
yes
 
11GO:0006325 establishment and/or maintenance of chromatin architecture
179
at_TSS
17
yes
 
12GO:0006323 DNA packaging
188
at_TSS
17
yes
 
13GO:0007389 pattern specification
128
before_TSS
17
yes
 
14GO:0007167 enzyme linked receptor protein signaling pathway
157
before_TSS
17
yes
 
15GO:0004519 endonuclease activity
70
before_TSS,after_TSS
15
yes
TF_S8,
16GO:0006333 chromatin assembly or disassembly
121
at_TSS
14
yes
 
17GO:0006461 protein complex assembly
123
at_TSS
14
yes
 
18GO:0031497 chromatin assembly
95
at_TSS
13
yes
 
19GO:0006334 nucleosome assembly
86
at_TSS
13
yes
 
20GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen
33
after_TSS
13
yes
 
21GO:0000279 M phase
122
before_TSS
13
 
TF_ELK,
22GO:0005529 sugar binding
144
before_TSS
12
 
TF_CDC5,
23GO:0019941 modification-dependent protein catabolism
94
before_TSS
11
 
TF_ARP1,
24GO:0006511 ubiquitin-dependent protein catabolism
94
before_TSS
11
 
TF_ARP1,

Pairs of TF_TST binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1TF_ARP1
before_TSS
2
GO:0019941 modification-dependent protein catabolism
11
94
2TF_E4BP4
before_TSS
1
GO:0005179 hormone activity
12
97
3TF_CDC5
before_TSS
1
GO:0005529 sugar binding
12
144
4TF_ELK
before_TSS
1
GO:0000279 M phase
13
122
5TF_S8
before_TSS
1
GO:0004519 endonuclease activity
11
70

Details on Gene Ontology terms for targets of TF_TST

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
yes
before_TSS
71
941
7.5
4.7
1.57
4.148
0
0.0001
GO:0030528 transcription regulator activity
2none
 
yes
before_TSS
55
719
7.6
4.7
1.6
3.725
0.0001
0.0008
GO:0003700 transcription factor activity
3none
 
 
after_TSS
52
356
14.6
9
1.61
3.704
0.0002
0.0032
GO:0005576
4none
 
 
at_TSS
36
427
8.4
4.6
1.79
3.718
0.0002
0.0048
GO:0006259 DNA metabolism
5none
 
 
after_TSS
34
237
14.3
9
1.58
2.866
0.0041
0.0345
GO:0043207 response to external biotic stimulus
6none
 
 
after_TSS
33
221
14.9
9
1.64
3.072
0.0021
0.0228
GO:0009613 response to pest, pathogen or parasite
7none
 
yes
before_TSS
26
302
8.6
4.7
1.8
3.163
0.0015
0.0071
GO:0005667
8none
 
 
after_TSS
23
90
25.5
9
2.82
5.474
0
0
GO:0004497 monooxygenase activity
9none
yes
 
before_TSS
22
172
12.7
6.8
1.86
3.088
0.002
0.0737
GO:0003735 structural constituent of ribosome
10none
 
 
after_TSS
19
91
20.8
9
2.3
3.944
0
0.0097
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
11none
 
 
after_TSS
19
97
19.5
9
2.16
3.628
0.0002
0.0065
GO:0005179 hormone activity
12none
 
 
at_TSS
18
208
8.6
4.6
1.84
2.724
0.0064
0.0983
GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
13none
 
yes
before_TSS
17
128
13.2
4.7
2.78
4.536
0
0.0001
GO:0007389 pattern specification
14none
 
yes
before_TSS
17
157
10.8
4.7
2.26
3.579
0.0003
0.021
GO:0007167 enzyme linked receptor protein signaling pathway
15none
 
 
at_TSS
17
188
9
4.6
1.92
2.841
0.0044
0.0748
GO:0006323 DNA packaging
16none
 
 
at_TSS
17
179
9.4
4.6
2.02
3.061
0.0022
0.0403
GO:0006325 establishment and/or maintenance of chromatin architecture
17none
 
 
after_TSS
15
70
21.4
9
2.36
3.617
0.0002
0.0545
GO:0004519 endonuclease activity
18none
 
 
at_TSS
14
121
11.5
4.6
2.46
3.594
0.0003
0.0062
GO:0006333 chromatin assembly or disassembly
19none
 
 
at_TSS
14
123
11.3
4.6
2.42
3.525
0.0004
0.0091
GO:0006461 protein complex assembly
20none
 
 
at_TSS
13
86
15.1
4.6
3.22
4.586
0
0
GO:0006334 nucleosome assembly
21none
 
 
after_TSS
13
33
39.3
9
4.35
6.081
0
0
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen
22none
 
 
at_TSS
13
95
13.6
4.6
2.91
4.159
0
0.0006
GO:0031497 chromatin assembly
23none
 
 
at_TSS
11
78
14.1
4.6
3
3.941
0
0.0016
GO:0000786
24none
 
 
at_TSS
11
88
12.5
4.6
2.66
3.475
0.0005
0.0116
GO:0005694
25TF_ARP1
 
 
before_TSS
11
94
11.7
2.8
4.14
5.213
0
0.004
GO:0019941 modification-dependent protein catabolism
26TF_ARP1
 
 
before_TSS
11
94
11.7
2.8
4.14
5.213
0
0.004
GO:0006511 ubiquitin-dependent protein catabolism
27TF_CDC5
 
 
before_TSS
12
144
8.3
2.5
3.27
4.437
0
0.0197
GO:0005529 sugar binding
28TF_E4BP4
 
 
before_TSS
12
97
12.3
3.4
3.55
4.798
0
0.0115
GO:0005179 hormone activity
29TF_ELK
 
 
before_TSS
13
122
10.6
3.1
3.36
4.75
0
0.0439
GO:0000279 M phase
30TF_S8
 
 
before_TSS
11
70
15.7
3.6
4.27
5.366
0
0.0034
GO:0004519 endonuclease activity