CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_YY1

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_YY1
TF_YY1 alone
In pair
with
1GO:0003676 nucleic acid binding
2302
before_TSS
166
yes
 
2GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolism
2284
at_TSS
117
 
MIT_006SP1,
3GO:0003677 DNA binding
1509
before_TSS
109
yes
 
4GO:0003723 RNA binding
354
at_TSS,before_TSS,after_TSS
97
yes
TF_AHR, TF_SP1,
5GO:0016070 RNA metabolism
342
at_TSS,after_TSS
88
yes
 
6GO:0009059 macromolecule biosynthesis
472
at_TSS
81
yes
 
7GO:0006412 protein biosynthesis
421
at_TSS
80
yes
 
8GO:0006396 RNA processing
273
at_TSS,after_TSS
72
yes
 
9GO:0006512 ubiquitin cycle
390
after_TSS
65
yes
TF_MAZR,
10GO:0005198 structural molecule activity
500
at_TSS
56
yes
 
11GO:0003735 structural constituent of ribosome
172
at_TSS,after_TSS
56
yes
TF_ELK, MIT_011GABP,
12GO:0016071 mRNA metabolism
202
at_TSS,after_TSS
55
yes
TF_AHR, TF_SP1,
13GO:0051276 chromosome organization and biogenesis
220
at_TSS,after_TSS
53
yes
TF_SP1,
14GO:0006397 mRNA processing
189
at_TSS,after_TSS
50
yes
TF_AHR,
15GO:0006325 establishment and/or maintenance of chromatin architecture
179
at_TSS,after_TSS
45
yes
TF_SP1,
16GO:0006323 DNA packaging
188
at_TSS,after_TSS
45
yes
TF_SP1,
17GO:0008380 RNA splicing
154
at_TSS,after_TSS
42
yes
TF_AHR,
18GO:0000398 nuclear mRNA splicing, via spliceosome
149
at_TSS,after_TSS
41
yes
TF_AHR,
19GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
149
at_TSS,after_TSS
41
yes
TF_AHR,
20GO:0000375 RNA splicing, via transesterification reactions
149
at_TSS,after_TSS
41
yes
TF_AHR,
21GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
208
at_TSS,after_TSS
38
yes
TF_SP1,
22GO:0043037 translation
128
before_TSS,after_TSS
33
yes
 
23GO:0015399 primary active transporter activity
168
at_TSS,after_TSS
31
yes
 
24GO:0019941 modification-dependent protein catabolism
94
at_TSS,after_TSS
30
yes
TF_MAZR,
25GO:0006511 ubiquitin-dependent protein catabolism
94
at_TSS,after_TSS
30
yes
TF_MAZR,
26GO:0015077 monovalent inorganic cation transporter activity
138
at_TSS,after_TSS
27
yes
 
27GO:0015078 hydrogen ion transporter activity
133
at_TSS,after_TSS
27
yes
 
28GO:0045182 translation regulator activity
90
at_TSS,before_TSS,after_TSS
27
yes
 
29GO:0008135 translation factor activity, nucleic acid binding
86
at_TSS,before_TSS,after_TSS
26
yes
 
30GO:0016568 chromatin modification
78
at_TSS,after_TSS
24
yes
TF_SP1, MIT_006SP1,
31GO:0004386 helicase activity
108
at_TSS
23
yes
TF_ELK,
32GO:0008134 transcription factor binding
110
at_TSS,after_TSS
22
yes
 
33GO:0003712 transcription cofactor activity
94
at_TSS,after_TSS
21
yes
 
34GO:0045941 positive regulation of transcription
103
after_TSS
20
yes
 
35GO:0045935 positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
104
after_TSS
20
yes
 
36GO:0008026 ATP-dependent helicase activity
86
at_TSS,before_TSS
19
yes
TF_ELK,
37GO:0046903 secretion
123
at_TSS
18
yes
 
38GO:0003713 transcription coactivator activity
52
after_TSS
15
yes
 
39GO:0016651 oxidoreductase activity, acting on NADH or NADPH
47
at_TSS
15
yes
 
40GO:0003743 translation initiation factor activity
53
after_TSS
14
yes
 
41GO:0003954 NADH dehydrogenase activity
32
at_TSS,after_TSS
12
yes
 
42GO:0015081 sodium ion transporter activity
32
at_TSS,after_TSS
12
yes
 
43GO:0006887 exocytosis
49
after_TSS
12
yes
 
44GO:0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor
34
at_TSS,after_TSS
12
yes
 
45GO:0050136 NADH dehydrogenase (quinone) activity
32
at_TSS,after_TSS
12
yes
 
46GO:0008639 small protein conjugating enzyme activity
30
after_TSS
12
yes
 
47GO:0051187 cofactor catabolism
29
after_TSS
12
yes
 
48GO:0004840 ubiquitin conjugating enzyme activity
29
after_TSS
12
yes
 
49GO:0006413 translational initiation
36
after_TSS
12
yes
 
50GO:0008137 NADH dehydrogenase (ubiquinone) activity
32
at_TSS,after_TSS
12
yes
 
51GO:0006445 regulation of translation
32
after_TSS
10
yes
 
52GO:0005529 sugar binding
144
before_TSS
10
 
TF_POU6F, TF_FOXO,

Pairs of TF_YY1 binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1TF_AHR
before_TSS,after_TSS
7
GO:0003723 RNA binding
23
354
2TF_SP1
at_TSS,after_TSS
7
GO:0003723 RNA binding
18
354
3TF_MAZR
after_TSS
3
GO:0006512 ubiquitin cycle
22
390
4TF_ELK
at_TSS,after_TSS
3
GO:0003735 structural constituent of ribosome
27
172
5MIT_006SP1
at_TSS
2
GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolism
117
2284
6TF_FOXO
before_TSS
1
GO:0005529 sugar binding
10
144
7TF_POU6F
before_TSS
1
GO:0005529 sugar binding
10
144
8MIT_011GABP
at_TSS
1
GO:0003735 structural constituent of ribosome
10
172

Details on Gene Ontology terms for targets of TF_YY1

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
yes
before_TSS
166
2302
7.2
4.8
1.5
6.012
0
0
GO:0003676 nucleic acid binding
2none
 
yes
before_TSS
109
1509
7.2
4.8
1.5
4.705
0
0
GO:0003677 DNA binding
3none
 
 
after_TSS
97
354
27.4
15.8
1.72
6.019
0
0
GO:0003723 RNA binding
4none
 
 
at_TSS
96
547
17.5
9.8
1.78
6.177
0
0
GO:0005739
5none
 
 
after_TSS
88
342
25.7
15.8
1.62
5.055
0
0
GO:0016070 RNA metabolism
6none
 
 
at_TSS
81
472
17.1
9.8
1.74
5.43
0
0
GO:0009059 macromolecule biosynthesis
7none
 
 
at_TSS
80
421
19
9.8
1.92
6.407
0
0
GO:0006412 protein biosynthesis
8none
 
 
at_TSS
78
354
22
9.8
2.23
7.8
0
0
GO:0003723 RNA binding
9none
 
 
at_TSS
74
342
21.6
9.8
2.19
7.413
0
0
GO:0016070 RNA metabolism
10none
 
 
after_TSS
72
273
26.3
15.8
1.66
4.797
0
0
GO:0006396 RNA processing
11none
 
yes
after_TSS
65
390
16.6
9.8
1.69
4.614
0
0.0014
GO:0006512 ubiquitin cycle
12none
 
 
at_TSS
61
273
22.3
9.8
2.26
7
0
0
GO:0006396 RNA processing
13none
 
yes
at_TSS
56
500
11.2
7
1.58
3.704
0.0002
0.0776
GO:0005198 structural molecule activity
14none
 
 
after_TSS
56
172
32.5
15.8
2.05
6.027
0
0
GO:0003735 structural constituent of ribosome
15none
 
 
after_TSS
55
202
27.2
15.8
1.71
4.449
0
0.0002
GO:0016071 mRNA metabolism
16none
 
 
after_TSS
53
220
24
15.8
1.51
3.362
0.0007
0.0166
GO:0051276 chromosome organization and biogenesis
17none
 
 
at_TSS
51
202
25.2
9.8
2.56
7.399
0
0
GO:0016071 mRNA metabolism
18none
 
 
after_TSS
50
189
26.4
15.8
1.66
4.008
0
0.0016
GO:0006397 mRNA processing
19none
 
 
after_TSS
50
183
27.3
15.8
1.72
4.267
0
0.0024
GO:0030529
20none
 
 
at_TSS
46
172
26.7
9.8
2.71
7.482
0
0
GO:0003735 structural constituent of ribosome
21none
 
 
at_TSS
45
189
23.8
9.8
2.41
6.485
0
0
GO:0006397 mRNA processing
22none
 
 
at_TSS
45
183
24.5
9.8
2.49
6.737
0
0
GO:0030529
23none
 
 
after_TSS
45
179
25.1
15.8
1.58
3.414
0.0006
0.0117
GO:0006325 establishment and/or maintenance of chromatin architecture
24none
 
 
after_TSS
45
188
23.9
15.8
1.5
3.045
0.0023
0.034
GO:0006323 DNA packaging
25none
 
 
after_TSS
43
157
27.3
15.8
1.72
3.97
0
0.0087
GO:0005829
26none
 
 
after_TSS
42
154
27.2
15.8
1.71
3.892
0
0.0027
GO:0008380 RNA splicing
27none
 
 
after_TSS
41
149
27.5
15.8
1.73
3.91
0
0.0025
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
28none
 
 
after_TSS
41
149
27.5
15.8
1.73
3.91
0
0.0025
GO:0000398 nuclear mRNA splicing, via spliceosome
29none
 
 
after_TSS
41
149
27.5
15.8
1.73
3.91
0
0.0025
GO:0000375 RNA splicing, via transesterification reactions
30none
 
 
after_TSS
41
136
30.1
15.8
1.89
4.577
0
0.0008
GO:0005840
31none
 
 
at_TSS
40
220
18.1
9.8
1.84
4.18
0
0.0008
GO:0051276 chromosome organization and biogenesis
32none
 
 
at_TSS
38
154
24.6
9.8
2.5
6.208
0
0
GO:0008380 RNA splicing
33none
 
 
at_TSS
38
136
27.9
9.8
2.83
7.114
0
0
GO:0005840
34none
 
 
at_TSS
38
208
18.2
9.8
1.85
4.105
0
0.0012
GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
35none
 
 
at_TSS
37
149
24.8
9.8
2.51
6.17
0
0
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
36none
 
 
at_TSS
37
149
24.8
9.8
2.51
6.17
0
0
GO:0000375 RNA splicing, via transesterification reactions
37none
 
 
at_TSS
37
149
24.8
9.8
2.51
6.17
0
0
GO:0000398 nuclear mRNA splicing, via spliceosome
38none
 
 
at_TSS
35
188
18.6
9.8
1.88
4.06
0
0.0011
GO:0006323 DNA packaging
39none
 
 
at_TSS
34
179
18.9
9.8
1.92
4.131
0
0.0009
GO:0006325 establishment and/or maintenance of chromatin architecture
40none
 
 
after_TSS
33
128
25.7
15.8
1.62
3.08
0.002
0.0841
GO:0043037 translation
41none
 
yes
after_TSS
31
168
18.4
9.8
1.87
3.783
0.0001
0.0567
GO:0015399 primary active transporter activity
42none
 
 
at_TSS
31
168
18.4
9.8
1.87
3.763
0.0001
0.0307
GO:0015399 primary active transporter activity
43none
 
 
after_TSS
30
94
31.9
15.8
2
4.269
0
0.0071
GO:0006511 ubiquitin-dependent protein catabolism
44none
 
 
after_TSS
30
94
31.9
15.8
2
4.269
0
0.0071
GO:0019941 modification-dependent protein catabolism
45none
 
 
after_TSS
27
90
30
15.8
1.88
3.678
0.0002
0.0107
GO:0045182 translation regulator activity
46none
 
yes
after_TSS
27
138
19.5
9.8
1.99
3.866
0.0001
0.0404
GO:0015077 monovalent inorganic cation transporter activity
47none
 
yes
after_TSS
27
133
20.3
9.8
2.06
4.081
0
0.0164
GO:0015078 hydrogen ion transporter activity
48none
 
 
after_TSS
26
86
30.2
15.8
1.9
3.654
0.0002
0.0118
GO:0008135 translation factor activity, nucleic acid binding
49none
 
 
at_TSS
26
133
19.5
9.8
1.98
3.77
0.0001
0.0597
GO:0015078 hydrogen ion transporter activity
50none
 
 
after_TSS
24
78
30.7
15.8
1.93
3.609
0.0003
0.0187
GO:0016568 chromatin modification
51none
 
yes
before_TSS
23
302
7.6
4.8
1.58
2.317
0.0205
0.063
GO:0005667
52none
 
 
at_TSS
23
108
21.2
9.8
2.16
4.005
0
0.0056
GO:0004386 helicase activity
53none
 
 
at_TSS
22
94
23.4
9.8
2.37
4.423
0
0.0017
GO:0019941 modification-dependent protein catabolism
54none
 
yes
after_TSS
22
110
20
9.8
2.03
3.602
0.0003
0.0385
GO:0008134 transcription factor binding
55none
 
 
at_TSS
22
94
23.4
9.8
2.37
4.423
0
0.0017
GO:0006511 ubiquitin-dependent protein catabolism
56none
 
yes
at_TSS
21
138
15.2
7
2.15
3.77
0.0001
0.0298
GO:0015077 monovalent inorganic cation transporter activity
57none
 
yes
after_TSS
21
94
22.3
9.8
2.27
4.092
0
0.0078
GO:0003712 transcription cofactor activity
58none
 
yes
after_TSS
20
103
19.4
9.8
1.97
3.285
0.001
0.0746
GO:0045941 positive regulation of transcription
59none
 
 
at_TSS
20
78
25.6
9.8
2.6
4.691
0
0.0009
GO:0016568 chromatin modification
60none
 
yes
after_TSS
20
104
19.2
9.8
1.95
3.236
0.0012
0.0887
GO:0045935 positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
61none
 
 
at_TSS
19
86
22
9.8
2.24
3.82
0.0001
0.0097
GO:0008026 ATP-dependent helicase activity
62none
 
yes
at_TSS
18
123
14.6
7
2.07
3.303
0.0009
0.07
GO:0046903 secretion
63none
 
yes
at_TSS
17
110
15.4
7
2.19
3.46
0.0005
0.0329
GO:0008134 transcription factor binding
64none
 
 
at_TSS
17
90
18.8
9.8
1.91
2.885
0.0039
0.055
GO:0045182 translation regulator activity
65none
 
 
at_TSS
16
86
18.6
9.8
1.88
2.731
0.0063
0.0962
GO:0008135 translation factor activity, nucleic acid binding
66none
 
yes
at_TSS
16
94
17
7
2.41
3.792
0.0001
0.0546
GO:0003712 transcription cofactor activity
67none
 
yes
after_TSS
15
52
28.8
9.8
2.93
4.618
0
0.0014
GO:0003713 transcription coactivator activity
68none
 
yes
before_TSS
15
128
11.7
4.8
2.44
3.68
0.0002
0.0426
GO:0043037 translation
69none
 
 
at_TSS
15
47
31.9
9.8
3.23
5.082
0
0.0001
GO:0016651 oxidoreductase activity, acting on NADH or NADPH
70none
 
yes
after_TSS
14
53
26.4
9.8
2.68
4.066
0
0.0175
GO:0003743 translation initiation factor activity
71none
 
yes
before_TSS
14
90
15.5
4.8
3.24
4.79
0
0.0006
GO:0045182 translation regulator activity
72none
 
yes
before_TSS
14
86
16.2
4.8
3.39
4.997
0
0.0002
GO:0008135 translation factor activity, nucleic acid binding
73none
 
yes
before_TSS
13
86
15.1
4.8
3.14
4.49
0
0.0026
GO:0008026 ATP-dependent helicase activity
74none
 
 
at_TSS
12
54
22.2
9.8
2.25
3.054
0.0022
0.0826
GO:0005681
75none
 
 
after_TSS
12
32
37.5
15.8
2.36
3.35
0.0008
0.0492
GO:0050136 NADH dehydrogenase (quinone) activity
76none
 
 
after_TSS
12
30
40
15.8
2.51
3.618
0.0002
0.0543
GO:0008639 small protein conjugating enzyme activity
77none
 
 
after_TSS
12
29
41.3
15.8
2.6
3.761
0.0001
0.0309
GO:0004840 ubiquitin conjugating enzyme activity
78none
 
 
after_TSS
12
32
37.5
15.8
2.36
3.35
0.0008
0.0492
GO:0015081 sodium ion transporter activity
79none
 
 
after_TSS
12
32
37.5
15.8
2.36
3.35
0.0008
0.0492
GO:0008137 NADH dehydrogenase (ubiquinone) activity
80none
 
 
at_TSS
12
34
35.2
9.8
3.58
4.982
0
0.0002
GO:0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor
81none
 
 
after_TSS
12
32
37.5
15.8
2.36
3.35
0.0008
0.0492
GO:0003954 NADH dehydrogenase activity
82none
 
yes
after_TSS
12
49
24.4
9.8
2.49
3.456
0.0005
0.0668
GO:0006887 exocytosis
83none
 
yes
after_TSS
12
36
33.3
9.8
3.39
4.746
0
0.0007
GO:0006413 translational initiation
84none
 
 
after_TSS
12
29
41.3
15.8
2.6
3.761
0.0001
0.0206
GO:0051187 cofactor catabolism
85none
 
 
at_TSS
11
32
34.3
9.8
3.48
4.658
0
0.0011
GO:0015081 sodium ion transporter activity
86none
 
 
at_TSS
11
32
34.3
9.8
3.48
4.658
0
0.0011
GO:0008137 NADH dehydrogenase (ubiquinone) activity
87none
 
 
at_TSS
11
32
34.3
9.8
3.48
4.658
0
0.0011
GO:0050136 NADH dehydrogenase (quinone) activity
88none
 
 
at_TSS
11
32
34.3
9.8
3.48
4.658
0
0.0011
GO:0003954 NADH dehydrogenase activity
89none
 
yes
after_TSS
10
34
29.4
9.8
2.99
3.842
0.0001
0.0446
GO:0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor
90none
 
yes
after_TSS
10
32
31.2
9.8
3.18
4.077
0
0.0083
GO:0006445 regulation of translation
91MIT_006SP1
 
 
at_TSS
117
2284
5.1
3.2
1.57
5.613
0
0.0002
GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolism
92MIT_006SP1
 
 
at_TSS
10
78
12.8
3.2
3.94
4.785
0
0.0738
GO:0016568 chromatin modification
93MIT_011GABP
 
 
at_TSS
10
172
5.8
0.7
7.48
7.579
0
0
GO:0003735 structural constituent of ribosome
94TF_AHR
 
 
before_TSS
23
354
6.4
2.8
2.27
4.184
0
0.0825
GO:0003723 RNA binding
95TF_AHR
 
 
after_TSS
18
202
8.9
2.7
3.29
5.488
0
0.0001
GO:0016071 mRNA metabolism
96TF_AHR
 
 
after_TSS
17
154
11
2.7
4.08
6.421
0
0
GO:0008380 RNA splicing
97TF_AHR
 
 
after_TSS
17
149
11.4
2.7
4.22
6.596
0
0
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
98TF_AHR
 
 
after_TSS
17
189
8.9
2.7
3.32
5.377
0
0.0004
GO:0006397 mRNA processing
99TF_AHR
 
 
after_TSS
17
149
11.4
2.7
4.22
6.596
0
0
GO:0000375 RNA splicing, via transesterification reactions
100TF_AHR
 
 
after_TSS
17
149
11.4
2.7
4.22
6.596
0
0
GO:0000398 nuclear mRNA splicing, via spliceosome
101TF_ELK
 
 
at_TSS
27
172
15.6
3
5.09
9.641
0
0
GO:0003735 structural constituent of ribosome
102TF_ELK
 
 
at_TSS
24
136
17.6
3
5.72
9.883
0
0
GO:0005840
103TF_ELK
 
 
after_TSS
17
172
9.8
2.5
3.93
6.222
0
0
GO:0003735 structural constituent of ribosome
104TF_ELK
 
 
at_TSS
12
108
11.1
3
3.6
4.849
0
0.0076
GO:0004386 helicase activity
105TF_ELK
 
 
at_TSS
10
86
11.6
3
3.77
4.601
0
0.0201
GO:0008026 ATP-dependent helicase activity
106TF_FOXO
 
 
before_TSS
10
144
6.9
2
3.34
4.125
0
0.05
GO:0005529 sugar binding
107TF_GABP
 
 
at_TSS
16
136
11.7
2.1
5.35
7.652
0
0
GO:0005840
108TF_MAZR
 
yes
after_TSS
22
390
5.6
1
5.17
8.794
0
0
GO:0006512 ubiquitin cycle
109TF_MAZR
 
 
after_TSS
10
94
10.6
2.3
4.43
5.245
0
0.0067
GO:0006511 ubiquitin-dependent protein catabolism
110TF_MAZR
 
 
after_TSS
10
94
10.6
2.3
4.43
5.245
0
0.0067
GO:0019941 modification-dependent protein catabolism
111TF_POU6F
 
 
before_TSS
10
144
6.9
2.1
3.23
3.993
0
0.0762
GO:0005529 sugar binding
112TF_SP1
 
 
after_TSS
18
220
8.1
3
2.67
4.455
0
0.006
GO:0051276 chromosome organization and biogenesis
113TF_SP1
yes
 
at_TSS
18
354
5
1.5
3.27
5.453
0
0
GO:0003723 RNA binding
114TF_SP1
 
 
after_TSS
16
208
7.6
3
2.51
3.916
0
0.0525
GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
115TF_SP1
 
 
after_TSS
15
188
7.9
3
2.6
3.95
0
0.0482
GO:0006323 DNA packaging
116TF_SP1
 
 
after_TSS
15
179
8.3
3
2.74
4.167
0
0.0196
GO:0006325 establishment and/or maintenance of chromatin architecture
117TF_SP1
yes
 
at_TSS
11
202
5.4
1.5
3.5
4.511
0
0.0278
GO:0016071 mRNA metabolism
118TF_SP1
 
 
after_TSS
10
78
12.8
3
4.19
5.024
0
0.0072
GO:0016568 chromatin modification