CisView Mouse (mm6, March 2005)

Main Gene Ontology terms for targets of TF_ZIC

No.GO annotation
Total
genes
with GO
Location
Max no. of
genes with
TF_ZIC
TF_ZIC alone
In pair
with
1GO:0048513 organ development
852
before_TSS
71
yes
 
2GO:0009653 morphogenesis
811
before_TSS
71
yes
 
3GO:0009887 organ morphogenesis
674
before_TSS
63
yes
 
4GO:0007399 nervous system development
301
before_TSS,after_TSS
38
yes
 
5GO:0030182 neuron differentiation
137
after_TSS
22
yes
 
6GO:0007017 microtubule-based process
121
after_TSS
19
yes
 
7GO:0007389 pattern specification
128
before_TSS,after_TSS
18
yes
 
8GO:0048666 neuron development
108
after_TSS
17
yes
 
9GO:0009790 embryonic development
170
before_TSS
17
yes
 
10GO:0031175 neurite morphogenesis
96
after_TSS
15
yes
 
11GO:0048667 neuron morphogensis during differentiation
96
after_TSS
15
yes
 
12GO:0006732 coenzyme metabolism
159
after_TSS
12
 
MIT_101,
13GO:0007417 central nervous system development
76
before_TSS
11
yes
 
14GO:0001501 skeletal development
87
before_TSS
11
yes
 
15GO:0007420 brain development
63
before_TSS
10
yes
 
16GO:0008380 RNA splicing
154
at_TSS
10
 
TF_GABP,

Pairs of TF_ZIC binding sites with other TFBS

No.TFBS
Location
Total GO-s
Main GO annotation
N pairs for
main GO
Total genes
for main GO
1TF_GABP
at_TSS
1
GO:0008380 RNA splicing
10
154
2MIT_101
after_TSS
1
GO:0006732 coenzyme metabolism
12
159

Details on Gene Ontology terms for targets of TF_ZIC

Total number of genes = 12103
No.In pair
with
Multi-
ple
Conser-
ved
Location
Frequency
in list
U-clusters
in list
Genes with TFBS
in list, %
Genes with TFBS
total, %
Ratio
z
p
FDR
GO annotation
1none
 
yes
before_TSS
71
852
8.3
5
1.65
4.587
0
0
GO:0048513 organ development
2none
 
yes
before_TSS
71
811
8.7
5
1.74
5.035
0
0
GO:0009653 morphogenesis
3none
 
yes
before_TSS
63
674
9.3
5
1.86
5.287
0
0
GO:0009887 organ morphogenesis
4none
 
yes
after_TSS
38
301
12.6
7.4
1.69
3.481
0.0004
0.0101
GO:0007399 nervous system development
5none
 
yes
after_TSS
34
302
11.2
7.4
1.51
2.57
0.0101
0.059
GO:0005667
6none
 
yes
before_TSS
32
301
10.6
5
2.11
4.51
0
0.0001
GO:0007399 nervous system development
7none
 
yes
before_TSS
31
302
10.2
5
2.04
4.222
0
0.0002
GO:0005667
8none
 
 
after_TSS
25
52
48
24.1
1.98
4.03
0
0.0204
GO:0005875
9none
 
yes
after_TSS
22
137
16
7.4
2.16
3.874
0.0001
0.0055
GO:0030182 neuron differentiation
10none
 
yes
after_TSS
19
121
15.7
7.4
2.11
3.488
0.0004
0.089
GO:0007017 microtubule-based process
11none
 
yes
at_TSS
19
302
6.2
3.3
1.88
2.881
0.0039
0.0259
GO:0005667
12none
 
yes
after_TSS
18
128
14
7.4
1.89
2.877
0.004
0.0358
GO:0007389 pattern specification
13none
 
yes
after_TSS
17
108
15.7
7.4
2.11
3.309
0.0009
0.0263
GO:0048666 neuron development
14none
 
yes
before_TSS
17
170
10
5
1.99
2.991
0.0027
0.0391
GO:0009790 embryonic development
15none
 
yes
after_TSS
15
96
15.6
7.4
2.1
3.074
0.0021
0.0966
GO:0031175 neurite morphogenesis
16none
 
yes
before_TSS
15
128
11.7
5
2.33
3.486
0.0004
0.0048
GO:0007389 pattern specification
17none
 
yes
after_TSS
15
96
15.6
7.4
2.1
3.074
0.0021
0.0966
GO:0048667 neuron morphogensis during differentiation
18none
 
yes
before_TSS
11
76
14.4
5
2.88
3.783
0.0001
0.0027
GO:0007417 central nervous system development
19none
 
yes
before_TSS
11
87
12.6
5
2.51
3.265
0.001
0.04
GO:0001501 skeletal development
20none
 
yes
before_TSS
10
63
15.8
5
3.15
3.952
0
0.002
GO:0007420 brain development
21MIT_101
 
 
after_TSS
12
159
7.5
2.4
3.09
4.205
0
0.0867
GO:0006732 coenzyme metabolism
22TF_AHR
 
 
after_TSS
11
52
21.1
5.1
4.1
5.228
0
0.0074
GO:0005875
23TF_GABP
 
 
at_TSS
10
154
6.4
1.7
3.63
4.441
0
0.0429
GO:0008380 RNA splicing