CisView: Mouse (mm6, March2005)

Download Data and Software

Transcription start sites

1.Coordinates and attributesField annotations
2.Same in GFF format
3.Sequences (-1000 to +1000 bp)Fasta format

Cis-regulatory modules (CRM)

1.Coordinates and attributesField annotations
2.Same in GFF format
3.Sequences (fasta)Fasta format

Transcription factor binding sites (TFBS)

1.Coordinates and attributes of TFBS in the genome (2.4 Gb)Field annotations
2.Coordinates and attributes of TFBS in promoters (-1000 to +1000 bp), GFF format
3.Frequency distribution of TFBS in CpG-rich promotersField annotations
4.Frequency distribution of TFBS in CpG-poor promotersField annotations
5.Peaks in frequency distribution of TFBS in promotersField annotations
6.Pairs of TFBS that are significantly over-represented at a specific distanceField annotations
7.Frequency distribution of TFBS in promotersField annotations
8.Summary of association between TFBS and GO-terms of target genesField annotations
9.Pairs of TFBS associated with GO-terms of target genesField annotations
10.Details on association between TFBS at TSS (-200 to 50 bp) and GO-terms of target genesField annotations
11.Details on association between TFBS before TSS (-1000 to -200 bp) and GO-terms of target genesField annotations
12.Details on association between TFBS after TSS (0 to 500 bp) and GO-terms of target genesField annotations
13.Details on association between TFBS at DCRM (within 10 Kb) and GO-terms of target genesField annotations
14.TFBS position-weight matrixesField annotations
15.Core patterns derived from TFBS matrixesField annotations
16.TFBS patternsField annotations
17.Validation of association between TFBS and promoters of muscle-specific genes

Software for cisview assembly

CisView Software (zipped)
Read-me file