NIA Mouse Gene Index, mm8

Download NIA Mouse Gene Index ver.5

U-clusters (genes, gene candidates, and non-genes)

AnnotationsField annotations
Members and attributesField annotations
Genes and gene candidatesField annotations
Exon schemeField annotations
Virtual sequences (fasta)
Major transcripts for each geneField annotations
Potentially wrong strandField annotations
GO (gene ontology) annotation
Comparison of U-clusters with UniGene, TIGR, and DoTS

Transcripts

Annotations Field annotations
Sequences (fasta)
Members and attributes Field annotations
Genome alignment (BLAT-psl) Field annotations
Member alignment (BLAT-psl) Field annotations
ORF attributes Field annotations
ORF sequences (fasta)
Sequence repeats Field annotations
Transcripts in GFF format
Protein domains
GO (gene ontology) annotation
Alternative transcription/splicingField annotations

Comparison with other databases

Miscellaneous

Alignments deleted Field annotations
Alignments truncated Field annotations
Correspondence between U-clusters in ver.4 and ver.5 Field annotations
Renaming of U-clusters from previous run Field annotations
Renaming of transcripts from previous run Field annotations

Software for gene index assembly

Psl2gff Perl code to convert BLAT format to GFF
Gene Index Assembly Software (zipped)
Read-me file