CisView: Mouse (mm9, Jul 2007)
Transcription factor binding site ADD_CTCFA

Source: Szabo PE, Tang SH, Silva FJ, Tsark WM, Mann JR. 2004. Role of CTCF binding sites in the Igf2/H19 imprinting control region. Mol Cell Biol. 24: 4791-800.
TF group: CTCF
Pattern = CCGCRYGGYGGCAG (used as matrix, core elements are bold)     Class: CTCF     Allowed mismatch: 0.2
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Genes (trans-elements):
U-clusterSymbol
Annotation
U009750CtcfCCCTC-binding factor
U197485CtcflCCCTC-binding factor (zinc finger protein)-like

GO terms:
GO:0045786 negative regulation of cell cycle
GO:0006306 DNA methylation
GO:0006349 genetic imprinting
GO:0010216 maintenance of DNA methylation
GO:0008270 zinc ion binding
GO:0009048 dosage compensation, by inactivation of X chromosome
GO:0046872 metal ion binding
GO:0007049 cell cycle

Protein domains:
IPR004243 Minor capsid protein VI
IPR015880 Zinc finger, C2H2-like
IPR002929 Potato leaf roll virus readthrough protein
IPR013859 Protein of unknown function DUF1750, fungi
IPR010627 Peptidase A24A, N-terminal
IPR007625 Herpesvirus UL51 protein
IPR008882 Procyclic acidic repetitive

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend