TFBS = ADD_HELIOS

CisView: Mouse (mm9, Jul 2007)

Transcription factor binding site ADD_HELIOS

Source: Hahm K, Cobb BS, McCarty AS, Brown KE, Klug CA, Lee R, Akashi K, Weissman IL, Fisher AG, Smale ST. 1998. Helios, a T cell-restricted Ikaros family member that quantitatively associates with Ikaros at centromeric heterochromatin. Genes Dev. 12:782-96.
TF group: HELIOS TFBS class: ZF = Zinc finger Code: 2.3
Pattern = WRGGAWAA (core elements are bold) Class: HELIOS Allowed mismatch: 0.025
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Position weight matrix:

position A C G T
1 17 4 2 10
2 10 0 19 4
3 0 0 49 0
4 0 0 49 0
5 45 1 0 3
6 27 4 4 14
7 33 5 3 8
8 33 4 5 7

Genes (trans-elements):

U-cluster Symbol Annotation
U044027 Ikzf2 IKAROS family zinc finger 2

GO terms:
GO:0046872 metal ion binding
GO:0008270 zinc ion binding

Protein domains:
IPR015880 Zinc finger, C2H2-like

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

position	A	C	G	T
1	17	4	2	10
2	10	0	19	4
3	0	0	49	0
4	0	0	49	0
5	45	1	0	3
6	27	4	4	14
7	33	5	3	8
8	33	4	5	7

U-cluster	Symbol	Annotation
U044027	Ikzf2	IKAROS family zinc finger 2

Legend