CisView: Mouse (mm9, Jul 2007)
Transcription factor binding site ADD_HMG

Source: Schlierf B, Ludwig A, Klenovsek K, Wegner M. 2002.Cooperative binding of Sox10 to DNA: requirements and consequences. Nucleic Acids Res. 30:5509-16.
TF group: HMG       Code: 0.2.1.0
Pattern = WWCAAWG     Class: HMG     Allowed mismatch: 0
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Genes (trans-elements):
U-clusterSymbol
Annotation
U032043Hmg20bhigh mobility group 20 B
U032280Hmga2high mobility group AT-hook 2

GO terms:
GO:0000785 chromatin
GO:0006323 DNA packaging
GO:0016568 chromatin modification
GO:0000400 four-way junction DNA binding
GO:0006338 chromatin remodeling
GO:0007049 cell cycle
GO:0000228 nuclear chromosome
GO:0002111 BRCA2-BRAF35 complex
GO:0005694 chromosome
GO:0000794 condensed nuclear chromosome

Protein domains:
IPR000910 HMG1/2 (high mobility group) box

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend