CisView: Mouse (mm9, Jul 2007)
Transcription factor binding site ADD_MEL18

Source: Bina M, Wyss P, Ren W, Szpankowski W, Thomas E, Randhawa R, Reddy S, John PM, Pares-Matos EI, Stein A, Xu H, Lazarus SA. 2004. Exploring the characteristics of sequence elements in proximal promoters of human genes. Genomics. 84:929-40.
TF group: MEL18       TFBS class: ZF = Zinc finger       Code: 2.3
Pattern = GACTNGACT     Class: MEL18     Allowed mismatch: 0
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Genes (trans-elements):
U-clusterSymbol
Annotation
U033345Pcgf2polycomb group ring finger 2

GO terms:
GO:0031519 PcG protein complex
GO:0009952 anterior/posterior pattern formation
GO:0001739 sex chromatin
GO:0016604 nuclear body
GO:0046872 metal ion binding
GO:0004842 ubiquitin-protein ligase activity
GO:0016573 histone acetylation
GO:0008270 zinc ion binding
GO:0003682 chromatin binding

Protein domains:
IPR001841 Zinc finger, RING-type
IPR007796 Herpes virus major outer envelope glycoprotein
IPR008781 Pneumovirinae attachment membrane glycoprotein G

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend