TFBS = ADD_NANOG1

CisView: Mouse (mm9, Jul 2007)

Transcription factor binding site ADD_NANOG1

Source: Loh YH, Wu Q, Chew JL, Vega VB, Zhang W. et al. 2006. The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells. Nat Genet. 2006, 38:431-40.
TF group: NANOG TFBS class: HOX = Homeobox Code: 3.1.1
Pattern = GGGVCCATTKCC (core elements are bold) Class: NANOG Allowed mismatch: 0.099
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Position weight matrix:

position A C G T
1 20 15 55 10
2 21 12 61 6
3 24 1 74 1
4 34 36 29 1
5 8 62 0 29
6 1 98 1 0
7 98 1 0 1
8 3 0 3 94
9 0 1 0 99
10 16 2 33 49
11 20 62 10 8
12 0 100 0 0

Genes (trans-elements):

U-cluster Symbol Annotation
U007377 Nanog similar to Nanog homeobox

GO terms:
GO:0009880 embryonic pattern specification
GO:0043565 sequence-specific DNA binding
GO:0009790 embryonic development
GO:0042664 negative regulation of endodermal cell fate specification
GO:0017145 stem cell division
GO:0008406 gonad development
GO:0048863 stem cell differentiation
GO:0007275 multicellular organismal development

Protein domains:
IPR001356 Homeobox

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

position	A	C	G	T
1	20	15	55	10
2	21	12	61	6
3	24	1	74	1
4	34	36	29	1
5	8	62	0	29
6	1	98	1	0
7	98	1	0	1
8	3	0	3	94
9	0	1	0	99
10	16	2	33	49
11	20	62	10	8
12	0	100	0	0

U-cluster	Symbol	Annotation
U007377	Nanog	similar to Nanog homeobox

Legend