TFBS = ADD

CisView: Mouse (mm9, Jul 2007)

Transcription factor binding site ADD_PAX8

Source: Pellizzari L, Fabbro D, Longigro R, Dilauro R, Damante G. 1996 A network of specific minor-groove contacts is a common characteristic of paired-domain-DNA interactions. Biochem. J. 315:363-367.
TF group: PAX8 TFBS class: PAX = Paired box Code: 3.2.2.1.1
Pattern = WYGCRTGADH (core elements are bold) Class: PAX8 Allowed mismatch: 0.048 Palindrome
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Position weight matrix:

position A C G T
1 20 10 8 20
2 12 16 4 26
3 4 7 40 7
4 14 31 9 4
5 18 3 32 5
6 3 2 6 47
7 5 2 44 7
8 36 5 12 5
9 17 7 22 12
10 14 13 9 22

Genes (trans-elements):

U-cluster Symbol Annotation
U022363 Pax8 paired box gene 8

GO terms:
GO:0009887 organ morphogenesis
GO:0030154 cell differentiation
GO:0016563 transcription activator activity
GO:0030878 thyroid gland development
GO:0001656 metanephros development
GO:0007275 multicellular organismal development

Protein domains:
IPR001523 Paired box protein, N-terminal

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

position	A	C	G	T
1	20	10	8	20
2	12	16	4	26
3	4	7	40	7
4	14	31	9	4
5	18	3	32	5
6	3	2	6	47
7	5	2	44	7
8	36	5	12	5
9	17	7	22	12
10	14	13	9	22

Legend