CisView: Mouse (mm9, Jul 2007)
Transcription factor binding site ADD_SF1A

Source: Barnea E, Bergman Y. 2000. Synergy of SF1 and RAR in activation of Oct-3/4 promoter. J Biol Chem. 275:6608-19.
TF group: SF1       TFBS class: HR = Hormone receptor       Code: 2.1.2
Pattern = YCAAGGYCR     Class: SF1     Allowed mismatch: 0
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Genes (trans-elements):
U-clusterSymbol
Annotation
U038689Sf1splicing factor 1

GO terms:
GO:0008380 RNA splicing
GO:0046872 metal ion binding
GO:0006397 mRNA processing
GO:0003723 RNA binding
GO:0008270 zinc ion binding
GO:0005681 spliceosome

Protein domains:
IPR001878 Zinc finger, CCHC-type
IPR010820 Protein of unknown function DUF1421
IPR010278 Equine herpesvirus glycoprotein gp2
IPR010501 TraB pilus assembly
IPR004087 K Homology
IPR002951 Atrophin
IPR007583 GRASP55/65
IPR004088 K Homology, type 1
IPR007796 Herpes virus major outer envelope glycoprotein
IPR010881 Gammaherpesvirus latent membrane
IPR006077 Vinculin/alpha-catenin
IPR006745 Protein of unknown function DUF605
IPR007738 Homeobox prospero-like
IPR008871 Totivirus coat

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

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