CisView: Mouse (mm9, Jul 2007)
Transcription factor binding site ADD_SOX18

Source: Bina M, Wyss P, Ren W, Szpankowski W, Thomas E, Randhawa R, Reddy S, John PM, Pares-Matos EI, Stein A, Xu H, Lazarus SA. 2004. Exploring the characteristics of sequence elements in proximal promoters of human genes. Genomics. 84:929-40.
TF group: SOX       TFBS class: HMG = High mobility group       Code: 4.7.1.0
Pattern = AACAAAG     Class: SOX     Allowed mismatch: 0
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Genes (trans-elements):
U-clusterSymbol
Annotation
U003145Sox2SRY-box containing gene 2
U012826Sox15SRY-box containing gene 15
U013510Sox9SRY-box containing gene 9
U015966Sox21SRY-box containing gene 21
U021771Sox13SRY-box containing gene 13
U023502Sox12SRY-box containing gene 12
U023794Sox18SRY-box containing gene 18
U028015Sox5SRY-box containing gene 5
U029157Sox6SRY-box containing gene 6
U031238Sox14SRY-box containing gene 14
U036399Sox10SRY-box containing gene 10
U037556Sox8SRY-box containing gene 8
U039416Sox3SRY-box containing gene 3
U072950Sox4SRY-box containing gene 4
U232573
U302716

GO terms:
GO:0000785 chromatin
GO:0045165 cell fate commitment
GO:0030154 cell differentiation
GO:0007422 peripheral nervous system development
GO:0051216 cartilage development
GO:0001708 cell fate specification
GO:0001701 in utero embryonic development
GO:0003682 chromatin binding
GO:0048627 myoblast development
GO:0042981 regulation of apoptosis
GO:0001570 vasculogenesis
GO:0009887 organ morphogenesis
GO:0008483 transaminase activity
GO:0048568 embryonic organ development
GO:0043565 sequence-specific DNA binding
GO:0016740 transferase activity
GO:0042127 regulation of cell proliferation
GO:0035051 cardiac cell differentiation
GO:0007605 sensory perception of sound
GO:0048589 developmental growth
GO:0001942 hair follicle development
GO:0050973 detection of mechanical stimulus involved in equilibrioception
GO:0050910 detection of mechanical stimulus involved in sensory perception of sound
GO:0001502 cartilage condensation
GO:0042692 muscle cell differentiation
GO:0016563 transcription activator activity
GO:0042472 inner ear morphogenesis
GO:0001525 angiogenesis
GO:0019100 male germ-line sex determination
GO:0003705 RNA polymerase II transcription factor activity, enhancer binding
GO:0046148 pigment biosynthetic process
GO:0007507 heart development
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0045892 negative regulation of transcription, DNA-dependent
GO:0048646 anatomical structure formation
GO:0006325 establishment and/or maintenance of chromatin architecture
GO:0048709 oligodendrocyte differentiation
GO:0048484 enteric nervous system development
GO:0043403 skeletal muscle regeneration
GO:0030900 forebrain development
GO:0030238 male sex determination
GO:0007275 multicellular organismal development
GO:0008584 male gonad development
GO:0014032 neural crest cell development
GO:0001837 epithelial to mesenchymal transition
GO:0045843 negative regulation of striated muscle development
GO:0031017 exocrine pancreas development
GO:0030318 melanocyte differentiation
GO:0048515 spermatid differentiation

Protein domains:
IPR000910 HMG1/2 (high mobility group) box
IPR007470 HemX
IPR003395 SMC protein, N-terminal
IPR008626 GAL11 transcriptional regulator
IPR003363 Glycoprotein GG/GX
IPR007583 GRASP55/65
IPR006745 Protein of unknown function DUF605

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend