TFBS list

CisView: Mouse (mm6, March2005)

List of transcription factor binding sites

No. Name Group Reference Distribution in promoters
1. ADD_AFP1 AFP1 Sawadaishi et al. (1988)
2. ADD_AIRE AIRE Kumar et al. (2001)
3. ADD_AR AR Nelson et al. (1999)
4. ADD_CIZ CIZ Nakamoto et al. (2000)
5. ADD_CTCFA CTCF Szabo et al. (2004)
6. ADD_CTCFB CTCF Moon et al. (2005)
7. ADD_CTCFC CTCF Moon et al. (2005)
8. ADD_FOXJ1 FOXJ1 Lim et al. (1997)
9. ADD_FOXP1 FOXP1 Wang et al. (2003)
10. ADD_FOXP3 FOXP3 Schubert et al. (2001)
11. ADD_FXRDR1 FXR Laffitte et al. (2000)
12. ADD_FXRDR3 FXR Laffitte et al. (2000)
13. ADD_FXRIR1 FXR Laffitte et al. (2000)
14. ADD_GAS GAS Bina et al. (2004)
15. ADD_GCM GCM Yu et al. (2002)
16. ADD_GCNF SF1 et al. (2005)>
17. ADD_HELIOS HELIOS Hahm et al. (1998)
18. ADD_HIF1 HIF1 Bina et al. (2004)
19. ADD_HMG HMG Schlierf et al. (2002)
20. ADD_HOGNESS HOGNESS
21. ADD_HOXA4 HOXA4 Wu and Wolgemuth (1993)
22. ADD_IPF1 IPF1 MacFarlane et al. (1994)
23. ADD_KLF KLF Bina et al. (2004)
24. ADD_LRH SF1 Gu et al. (2005)
25. ADD_LXR1 LXR Joseph et al. (2002)
26. ADD_LXR2 LXR Volle et al. (2004)
27. ADD_MAF MAF Johnsen et al. (1998)
28. ADD_MEF3 MEF3 Parmacek et al. (1994)
29. ADD_MEL18 MEL18 Bina et al. (2004)
30. ADD_MTF1A MTF1 Lichtlen et al. (2001)
31. ADD_MTF1B MTF1 Giedroc et al. (2001)
32. ADD_NANOG NANOG Mitsui et al. (2003)
33. ADD_NCX NCX Shimizu et al. (2000)
34. ADD_NERF NERF Oettgen et al. (1996)
35. ADD_NFW1 NFW1 Bina et al. (2004)
36. ADD_OCT4A OCT Nishimoto et al. (2003)
37. ADD_OCT4B OCT Botquin et al. (1998)
38. ADD_PAX1 PAX1 Chalepakis et al. (1991)
39. ADD_PAX8 PAX8 Pellizzari et al. (1996)
40. ADD_PIT PIT Argenton et al. (1996)
41. ADD_PITX PITX Amendt et al. (1998)
42. ADD_PU1 PU1 Van and and (1990)
43. ADD_SF1A SF1 Barnea and Bergman (2000)
44. ADD_SF1B SF1 Barnea and Bergman (2000)
45. ADD_SMAD SMAD Kusanagi et al. (2000)
46. ADD_SMAD3A SMAD Stroschein et al. (1999)
47. ADD_SMAD3B SMAD Wong et al. (1999)
48. ADD_SOX SOX Yuan et al. (1995)
49. ADD_SOX18 SOX Bina et al. (2004)
50. ADD_SRF SRF
51. ADD_TANTIGEN TANTIGEN
52. ADD_TBX5 TBX5 Ghosh et al. (2001)
53. ADD_TEF1 TEF Farrance et al. (1992)
54. ADD_TEL TEL Poirel et al. (1997)
55. ADD_TTF1A TTF1 Guazzi et al. (1990)
56. ADD_TTF1B TTF1 Damante et al. (1994)
57. ADD_UBP2 UBP2 Bina et al. (2004)
58. ADD_WHN WHN Schlake et al. (1997)
59. ADD_ZF5 ZF5 Kaplan and Calame (1997)
60. MIT_001NRF1 NRF1 Xie et al. (2005)
61. MIT_002MYC MYC Xie et al. (2005)
62. MIT_003ELK ELK Xie et al. (2005)
63. MIT_004 Xie et al. (2005)
64. MIT_005NFY NFY Xie et al. (2005)
65. MIT_006SP1 SP1 Xie et al. (2005)
66. MIT_007AP1 AP1 Xie et al. (2005)
67. MIT_008 Xie et al. (2005)
68. MIT_009ATF ATF Xie et al. (2005)
69. MIT_010YY1 YY1 Xie et al. (2005)
70. MIT_011GABP GABP Xie et al. (2005)
71. MIT_012MYOD MYOD Xie et al. (2005)
72. MIT_013LEF LEF Xie et al. (2005)
73. MIT_014ATF1 ATF1 Xie et al. (2005)
74. MIT_015AP4 AP4 Xie et al. (2005)
75. MIT_016ETS ETS Xie et al. (2005)
76. MIT_017IRF IRF Xie et al. (2005)
77. MIT_018SREBP SREBP Xie et al. (2005)
78. MIT_019 Xie et al. (2005)
79. MIT_020E4F1 E4F1 Xie et al. (2005)
80. MIT_021 Xie et al. (2005)
81. MIT_022 Xie et al. (2005)
82. MIT_023CHX CHX10 Xie et al. (2005)
83. MIT_024MAZ MAZ Xie et al. (2005)
84. MIT_025SF1 SF1 Xie et al. (2005)
85. MIT_026E4BP4 E4BP4 Xie et al. (2005)
86. MIT_027 Xie et al. (2005)
87. MIT_028RSRFC4 RSRFC4 Xie et al. (2005)
88. MIT_029 Xie et al. (2005)
89. MIT_030 Xie et al. (2005)
90. MIT_031 Xie et al. (2005)
91. MIT_032MAF MAF Xie et al. (2005)
92. MIT_033MEF2 MEF2 Xie et al. (2005)
93. MIT_034 Xie et al. (2005)
94. MIT_035MYOD MYOD Xie et al. (2005)
95. MIT_036FOXO FOXO Xie et al. (2005)
96. MIT_037 Xie et al. (2005)
97. MIT_038SF1 SF1 Xie et al. (2005)
98. MIT_039 Xie et al. (2005)
99. MIT_040STAT STAT Xie et al. (2005)
100. MIT_041MEIS MEIS Xie et al. (2005)
101. MIT_042 Xie et al. (2005)
102. MIT_043 Xie et al. (2005)
103. MIT_044OCT OCT Xie et al. (2005)
104. MIT_045 Xie et al. (2005)
105. MIT_046 Xie et al. (2005)
106. MIT_047NFY NFY Xie et al. (2005)
107. MIT_048NFKB NFKB Xie et al. (2005)
108. MIT_049SOX SOX Xie et al. (2005)
109. MIT_050PU1 PU1 Xie et al. (2005)
110. MIT_051TATA TATA Xie et al. (2005)
111. MIT_052PIT PIT Xie et al. (2005)
112. MIT_053MIF MIF Xie et al. (2005)
113. MIT_054MEF2 MEF2 Xie et al. (2005)
114. MIT_055NFAT NFAT Xie et al. (2005)
115. MIT_056PAX4 PAX4 Xie et al. (2005)
116. MIT_057 Xie et al. (2005)
117. MIT_058IPF1 IPF1 Xie et al. (2005)
118. MIT_059 Xie et al. (2005)
119. MIT_060FOXO FOXO Xie et al. (2005)
120. MIT_061LHX LHX Xie et al. (2005)
121. MIT_062 Xie et al. (2005)
122. MIT_063 Xie et al. (2005)
123. MIT_064AP1 AP1 Xie et al. (2005)
124. MIT_065FXR FXR Xie et al. (2005)
125. MIT_066 Xie et al. (2005)
126. MIT_067TCF11 TCF11 Xie et al. (2005)
127. MIT_068HSF HSF Xie et al. (2005)
128. MIT_069E2F E2F Xie et al. (2005)
129. MIT_070PAX3 PAX3 Xie et al. (2005)
130. MIT_071 Xie et al. (2005)
131. MIT_072 Xie et al. (2005)
132. MIT_073LEF LEF Xie et al. (2005)
133. MIT_074 Xie et al. (2005)
134. MIT_075STAT STAT Xie et al. (2005)
135. MIT_076AREB6 AREB6 Xie et al. (2005)
136. MIT_077 Xie et al. (2005)
137. MIT_078 Xie et al. (2005)
138. MIT_079TEF TEF Xie et al. (2005)
139. MIT_080 Xie et al. (2005)
140. MIT_081 Xie et al. (2005)
141. MIT_082 Xie et al. (2005)
142. MIT_083HNF3 HNF3 Xie et al. (2005)
143. MIT_084HNF1 HNF1 Xie et al. (2005)
144. MIT_085IRF IRF Xie et al. (2005)
145. MIT_086NFKB NFKB Xie et al. (2005)
146. MIT_087 Xie et al. (2005)
147. MIT_088 Xie et al. (2005)
148. MIT_089 Xie et al. (2005)
149. MIT_090CART CART Xie et al. (2005)
150. MIT_091 Xie et al. (2005)
151. MIT_092 Xie et al. (2005)
152. MIT_093PITX PITX Xie et al. (2005)
153. MIT_094GFI GFI Xie et al. (2005)
154. MIT_095 Xie et al. (2005)
155. MIT_096 Xie et al. (2005)
156. MIT_097CDP CDP Xie et al. (2005)
157. MIT_098 Xie et al. (2005)
158. MIT_099 Xie et al. (2005)
159. MIT_100 Xie et al. (2005)
160. MIT_101 Xie et al. (2005)
161. MIT_102 Xie et al. (2005)
162. MIT_103 Xie et al. (2005)
163. MIT_104 Xie et al. (2005)
164. MIT_105 Xie et al. (2005)
165. MIT_106 Xie et al. (2005)
166. MIT_107 Xie et al. (2005)
167. MIT_108FAC1 FAC1 Xie et al. (2005)
168. MIT_109 Xie et al. (2005)
169. MIT_110 Xie et al. (2005)
170. MIT_111AML AML Xie et al. (2005)
171. MIT_112 Xie et al. (2005)
172. MIT_113 Xie et al. (2005)
173. MIT_114 Xie et al. (2005)
174. MIT_115 Xie et al. (2005)
175. MIT_116 Xie et al. (2005)
176. MIT_117 Xie et al. (2005)
177. MIT_118 Xie et al. (2005)
178. MIT_119 Xie et al. (2005)
179. MIT_120 Xie et al. (2005)
180. MIT_121SRF SRF Xie et al. (2005)
181. MIT_122 Xie et al. (2005)
182. MIT_123 Xie et al. (2005)
183. MIT_124 Xie et al. (2005)
184. MIT_125 Xie et al. (2005)
185. MIT_126 Xie et al. (2005)
186. MIT_127 Xie et al. (2005)
187. MIT_128 Xie et al. (2005)
188. MIT_129 Xie et al. (2005)
189. MIT_130OLF1 OLF1 Xie et al. (2005)
190. MIT_131GATA GATA Xie et al. (2005)
191. MIT_132 Xie et al. (2005)
192. MIT_133 Xie et al. (2005)
193. MIT_134 Xie et al. (2005)
194. MIT_135 Xie et al. (2005)
195. MIT_136 Xie et al. (2005)
196. MIT_137 Xie et al. (2005)
197. MIT_138 Xie et al. (2005)
198. MIT_139FOXJ1 FOXJ1 Xie et al. (2005)
199. MIT_140 Xie et al. (2005)
200. MIT_141HSF HSF Xie et al. (2005)
201. MIT_142 Xie et al. (2005)
202. MIT_143 Xie et al. (2005)
203. MIT_144 Xie et al. (2005)
204. MIT_145 Xie et al. (2005)
205. MIT_146 Xie et al. (2005)
206. MIT_147 Xie et al. (2005)
207. MIT_148 Xie et al. (2005)
208. MIT_149 Xie et al. (2005)
209. MIT_150 Xie et al. (2005)
210. MIT_151 Xie et al. (2005)
211. MIT_152 Xie et al. (2005)
212. MIT_153 Xie et al. (2005)
213. MIT_154 Xie et al. (2005)
214. MIT_155 Xie et al. (2005)
215. MIT_156 Xie et al. (2005)
216. MIT_157 Xie et al. (2005)
217. MIT_158 Xie et al. (2005)
218. MIT_159 Xie et al. (2005)
219. MIT_160 Xie et al. (2005)
220. MIT_161 Xie et al. (2005)
221. MIT_162 Xie et al. (2005)
222. MIT_163 Xie et al. (2005)
223. MIT_164 Xie et al. (2005)
224. MIT_165 Xie et al. (2005)
225. MIT_166 Xie et al. (2005)
226. MIT_167 Xie et al. (2005)
227. MIT_168 Xie et al. (2005)
228. MIT_169 Xie et al. (2005)
229. MIT_170 Xie et al. (2005)
230. MIT_171 Xie et al. (2005)
231. MIT_172CEBP CEBP Xie et al. (2005)
232. MIT_173 Xie et al. (2005)
233. MIT_174 Xie et al. (2005)
234. NCBI_001 Marino-Ramirez et al. (2004)
235. NCBI_002 Marino-Ramirez et al. (2004)
236. NCBI_003 Marino-Ramirez et al. (2004)
237. NCBI_004 Marino-Ramirez et al. (2004)
238. NCBI_005 Marino-Ramirez et al. (2004)
239. TF_AHR AHR Matys et al. (2003)
240. TF_AML AML Matys et al. (2003)
241. TF_AP1 AP1 Matys et al. (2003)
242. TF_AP2 AP2 Matys et al. (2003)
243. TF_AP2A AP2A Matys et al. (2003)
244. TF_AP2REP AP2REP Matys et al. (2003)
245. TF_AP4 AP4 Matys et al. (2003)
246. TF_ARNT ARNT Matys et al. (2003)
247. TF_ARP1 ARP1 Matys et al. (2003)
248. TF_ATF1 ATF1 Matys et al. (2003)
249. TF_ATF6 ATF6 Matys et al. (2003)
250. TF_BARBIE BARBIE Matys et al. (2003)
251. TF_BRACH BRACH Matys et al. (2003)
252. TF_BRN BRN Matys et al. (2003)
253. TF_CART CART Matys et al. (2003)
254. TF_CDC5 CDC5 Matys et al. (2003)
255. TF_CDP CDP Matys et al. (2003)
256. TF_CDX CDX Matys et al. (2003)
257. TF_CEBP CEBP Matys et al. (2003)
258. TF_CHX CHX Matys et al. (2003)
259. TF_CLOX CLOX Matys et al. (2003)
260. TF_COMP COMP Matys et al. (2003)
261. TF_COUP COUP Matys et al. (2003)
262. TF_CP2 CP2 Matys et al. (2003)
263. TF_CREB CREB Matys et al. (2003)
264. TF_E2F E2F Matys et al. (2003)
265. TF_E47 E47 Matys et al. (2003)
266. TF_E4BP4 E4BP4 Matys et al. (2003)
267. TF_EF1D EF1D Matys et al. (2003)
268. TF_EGR1 EGR1 Matys et al. (2003)
269. TF_ELK ELK Matys et al. (2003)
270. TF_ER ER Matys et al. (2003)
271. TF_ETS ETS Matys et al. (2003)
272. TF_EVI EVI Matys et al. (2003)
273. TF_FAC1 FAC1 Matys et al. (2003)
274. TF_FOXD FOXD Matys et al. (2003)
275. TF_FOXJ2 FOXJ2 Matys et al. (2003)
276. TF_FOXO FOXO Matys et al. (2003)
277. TF_GABP GABP Matys et al. (2003)
278. TF_GATA GATA Matys et al. (2003)
279. TF_GFI GFI Matys et al. (2003)
280. TF_GR GR Matys et al. (2003)
281. TF_HAND HAND Matys et al. (2003)
282. TF_HEN1 HEN1 Matys et al. (2003)
283. TF_HFH HFH Matys et al. (2003)
284. TF_HLF HLF Matys et al. (2003)
285. TF_HMX HMX Matys et al. (2003)
286. TF_HNF1 HNF1 Matys et al. (2003)
287. TF_HNF3 HNF3 Matys et al. (2003)
288. TF_HNF4 HNF4 Matys et al. (2003)
289. TF_HOXA5 HOXA5 Matys et al. (2003)
290. TF_HSF HSF Matys et al. (2003)
291. TF_HTF HTF Matys et al. (2003)
292. TF_IK IK Matys et al. (2003)
293. TF_IRF IRF Matys et al. (2003)
294. TF_LHX LHX Matys et al. (2003)
295. TF_LUN LUN Matys et al. (2003)
296. TF_LYF LYF Matys et al. (2003)
297. TF_MAF MAF Matys et al. (2003)
298. TF_MAZR MAZR Matys et al. (2003)
299. TF_MEF2 MEF2 Matys et al. (2003)
300. TF_MEIS MEIS Matys et al. (2003)
301. TF_MEISHOX MEISHOX Matys et al. (2003)
302. TF_MIF MIF Matys et al. (2003)
303. TF_MRF2 MRF2 Matys et al. (2003)
304. TF_MSX MSX Matys et al. (2003)
305. TF_MYB MYB Matys et al. (2003)
306. TF_MYC MYC Matys et al. (2003)
307. TF_MYOD MYOD Matys et al. (2003)
308. TF_MZF MZF Matys et al. (2003)
309. TF_NF1 NF1 Matys et al. (2003)
310. TF_NFAT NFAT Matys et al. (2003)
311. TF_NFKB NFKB Matys et al. (2003)
312. TF_NFY NFY Matys et al. (2003)
313. TF_NKX NKX Matys et al. (2003)
314. TF_NRSF NRSF Matys et al. (2003)
315. TF_OCT OCT Matys et al. (2003)
316. TF_OLF1 OLF1 Matys et al. (2003)
317. TF_P300 P300 Matys et al. (2003)
318. TF_P53 P53 Matys et al. (2003)
319. TF_PAX2 PAX2 Matys et al. (2003)
320. TF_PAX3 PAX3 Matys et al. (2003)
321. TF_PAX4 PAX4 Matys et al. (2003)
322. TF_PAX6 PAX6 Matys et al. (2003)
323. TF_PBX PBX Matys et al. (2003)
324. TF_POLYA POLYA Matys et al. (2003)
325. TF_POU3F POU3F Matys et al. (2003)
326. TF_POU6F POU6F Matys et al. (2003)
327. TF_PPAR PPAR Matys et al. (2003)
328. TF_PPAR1 PPAR1 Matys et al. (2003)
329. TF_RFX RFX Matys et al. (2003)
330. TF_RFX1 RFX1 Matys et al. (2003)
331. TF_ROAZ ROAZ Matys et al. (2003)
332. TF_RORA RORA Matys et al. (2003)
333. TF_RP58 RP58 Matys et al. (2003)
334. TF_RREB RREB Matys et al. (2003)
335. TF_S8 S8 Matys et al. (2003)
336. TF_SOX9 SOX9 Matys et al. (2003)
337. TF_SP1 SP1 Matys et al. (2003)
338. TF_SREBP SREBP Matys et al. (2003)
339. TF_SREBP1 SREBP1 Matys et al. (2003)
340. TF_SRF SRF Matys et al. (2003)
341. TF_SRY SRY Matys et al. (2003)
342. TF_STAF STAF Matys et al. (2003)
343. TF_STAT STAT Matys et al. (2003)
344. TF_TAL1 TAL1 Matys et al. (2003)
345. TF_TATA TATA Matys et al. (2003)
346. TF_TAXCREB1 TAXCREB1 Matys et al. (2003)
347. TF_TAXCREB2 TAXCREB2 Matys et al. (2003)
348. TF_TGIF TGIF Matys et al. (2003)
349. TF_TST TST Matys et al. (2003)
350. TF_XVENT XVENT Matys et al. (2003)
351. TF_YY1 YY1 Matys et al. (2003)
352. TF_ZIC ZIC Matys et al. (2003)
353. TF_ZID ZID Matys et al. (2003)

Legend

+,- = orientation in CpG-poor and CpG-rich promoters. TSS is at the center of graphs.